A bio-inspired computational language for kinesin nanomotor
- Authors: Khataee, H. , Ibrahim, Yousef
- Date: 2012
- Type: Text , Conference proceedings
- Relation: Industrial Technology (ICIT), 2012 IEEE International Conference, Athens, Greece, 19-21 March 2012
- Full Text: false
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- Description: Kinesin nanomotor is a tiny vehicle that transports molecular cargoes within the cells. Many kinesin nanomotors can attach to a single cargo and coordinate their behaviors to transport the cargo. This behavioral coordination of kinesin nanomotors can be defined through a communicational language that kinesin nanomotors follow to transport the cargo. This paper proposes a computational language for kinesin nanomotor which is inspired by the nanomotor's natural behavior. In this technique, we have used behavioral Deterministic Finite Automaton (DFA) model of kinesin nanomotor which indicated internal intelligent and autonomous decision-making process of the nanomotor in response to its cell. In addition, the behavioral responses of kinesin nanomotor to its cell, behavioral DFA model of the nanomotor, were mapped to a computational regular language for the nanomotor. The proposed computational language for kinesin nanomotor was acceptable by the behavioral DFA model and also in good agreement with the natural behavior of the nanomotor. The development of such computational languages among intelligent and autonomous nanoparticles in nature paves the way for constructing potential bio-inspired nanorobotic systems as well as designing of some computational languages for their controlling.
Computing optimal electronic and mathematical properties of Buckyball nanoparticle using graph algorithms
- Authors: Khataee, H. , Ibrahim, Yousef , Sourchi, S. , Eskandari, L. , Teh Noranis, M.
- Date: 2012
- Type: Text , Journal article
- Relation: COMPEL - The International Journal for Computation and Mathematics in Electrical and Electronic Engineering Vol. 31, no. 2 (2012), p. 387-400
- Full Text: false
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- Description: Purpose – One of the significant underlying principles of nanorobotic systems deals with the understanding and conceptualization of their respective complex nanocomponents. This paper introduces a new methodology to compute a set of optimal electronic and mathematical properties of Buckyball nanoparticle using graph algorithms based on dynamic programming and greedy algorithm. Design/methodology/approach – Buckyball, C60, is composed of sixty equivalent carbon atoms arranged as a highly symmetric hollow spherical cage in the form of a soccer ball. At first, Wiener, hyper-Wiener, Harary and reciprocal Wiener indices were computed using dynamic programming and presented them as: W(Buckyball)=11870.4, WW(Buckyball)=52570.9, Ha(Buckyball)=102.2 and RW(Buckyball)=346.9. The polynomials of Buckyball, Hosoya and hyper-Hosoya, which are in relationship with Buckyball's indices, have also been computed. The relationships between Buckyball's indices and polynomials were then computed and demonstrated a good agreement with their mathematical equations. Also, a graph algorithm based on greedy algorithms was used to find some optimal electronic aspects of Buckyball's structure by computing the Minimum Weight Spanning Tree (MWST) of Buckyball. Findings – The computed MWST was indicated that for connecting sixty carbon atoms of Buckyball together: the minimum numbers of double bonds were 30; the minimum numbers of single bonds were 29; and the minimum numbers of electrons were 178. These results also had good agreement with the principles of the authors' used greedy algorithm. Originality/value – This paper has used the graph algorithms for computing the optimal electronic and mathematical properties of BB. It has focused on mathematical properties of BB including Wiener, hyper-Wiener, Harary and reciprocal Wiener indices as well as Hosoya and Hyper-Hosoya polynomials and computerized them with dynamic programming graph algorithms.
Flexible autonomous behaviors of kinesin and muscle myosin bio-nanorobots
- Authors: Khataee, H. , Ibrahim, Yousef , Liew, We-Chung
- Date: 2013
- Type: Text , Journal article
- Relation: IEEE Transactions on Industrial Electronics Vol. 60, no. 11 (2013), p. 5116-5123
- Full Text: false
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- Description: Kinesin and muscle myosin are considered as physical bio-nanoagents able to sense their cells through their sensors, make decision internally, and perform actions through their actuators. This paper has investigated and compared the flexible (reactive, pro-active, and interactive) autonomous behaviors of kinesin and muscle myosin bio-nanorobots. Using an automata algorithm, the agent-based deterministic finite automaton models of the internal decision making processes of the bio-nanorobots (as their reactive and pro-active capabilities) were converted to their respective computational regular languages (as their interactive capabilities). The resulted computational languages could represent the flexible autonomous behaviors of the bio-nanorobots. The proposed regular languages also reflected the degree of the autonomy and intelligence of internal decision-making processes of the bio-nanorobots in response to their environments. The comparison of flexible autonomous behaviors of kinesin and muscle myosin bio-nanorobots indicated that both bio-nanorobots employed regular languages to interact with their environments through two sensors and one actuator. Moreover, the results showed that kinesin bio-nanorobot used a more complex regular language to interact with its environment compared with muscle myosin bio-nanorobot. Therefore, our results have revealed that the flexible autonomous behavior of kinesin bio-nanorobot was more complicated than the flexible autonomous behavior of muscle myosin bio-nanorobot.
Modelling of internal architecture of kinesin nanomotor as a machine language
- Authors: Khataee, H. , Ibrahim, Yousef
- Date: 2012
- Type: Text , Journal article
- Relation: Nanobiotechnology Vol. 6, no. 3 (2012), p. 87-92
- Full Text: false
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- Description: Kinesin is a protein-based natural nanomotor that transports molecular cargoes within cells by walking along microtubules. Kinesin nanomotor is considered as a bio-nanoagent which is able to sense the cell through its sensors (i.e. its heads and tail), make the decision internally and perform actions on the cell through its actuator (i.e. its motor domain). The study maps the agent-based architectural model of internal decision-making process of kinesin nanomotor to a machine language using an automata algorithm. The applied automata algorithm receives the internal agent-based architectural model of kinesin nanomotor as a deterministic finite automaton (DFA) model and generates a regular machine language. The generated regular machine language was acceptable by the architectural DFA model of the nanomotor and also in good agreement with its natural behaviour. The internal agent-based architectural model of kinesin nanomotor indicates the degree of autonomy and intelligence of the nanomotor interactions with its cell. Thus, our developed regular machine language can model the degree of autonomy and intelligence of kinesin nanomotor interactions with its cell as a language. Modelling of internal architectures of autonomous and intelligent bio-nanosystems as machine languages can lay the foundation towards the concept of bio-nanoswarms and next phases of the bio-nanorobotic systems development.