A global optimisation approach to classification in medical diagnosis and prognosis
- Bagirov, Adil, Rubinov, Alex, Yearwood, John, Stranieri, Andrew
- Authors: Bagirov, Adil , Rubinov, Alex , Yearwood, John , Stranieri, Andrew
- Date: 2001
- Type: Text , Conference paper
- Relation: Paper presented at 34th Hawaii International Conference on System Sciences, HICSS-34, Maui, Hawaii, USA : 3rd-6th January 2001
- Full Text:
- Description: In this paper global optimisation-based techniques are studied in order to increase the accuracy of medical diagnosis and prognosis with FNA image data from the Wisconsin Diagnostic and Prognostic Breast Cancer databases. First we discuss the problem of determining the most informative features for the classification of cancerous cases in the databases under consideration. Then we apply a technique based on convex and global optimisation to breast cancer diagnosis. It allows the classification of benign cases and malignant ones and the subsequent diagnosis of patients with very high accuracy. The third application of this technique is a method that calculates centres of clusters to predict when breast cancer is likely to recur in patients for which cancer has been removed. The technique achieves higher accuracy with these databases than reported elsewhere in the literature.
- Description: 2003003950
- Authors: Bagirov, Adil , Rubinov, Alex , Yearwood, John , Stranieri, Andrew
- Date: 2001
- Type: Text , Conference paper
- Relation: Paper presented at 34th Hawaii International Conference on System Sciences, HICSS-34, Maui, Hawaii, USA : 3rd-6th January 2001
- Full Text:
- Description: In this paper global optimisation-based techniques are studied in order to increase the accuracy of medical diagnosis and prognosis with FNA image data from the Wisconsin Diagnostic and Prognostic Breast Cancer databases. First we discuss the problem of determining the most informative features for the classification of cancerous cases in the databases under consideration. Then we apply a technique based on convex and global optimisation to breast cancer diagnosis. It allows the classification of benign cases and malignant ones and the subsequent diagnosis of patients with very high accuracy. The third application of this technique is a method that calculates centres of clusters to predict when breast cancer is likely to recur in patients for which cancer has been removed. The technique achieves higher accuracy with these databases than reported elsewhere in the literature.
- Description: 2003003950
Diagnostic with incomplete nominal/discrete data
- Jelinek, Herbert, Yatsko, Andrew, Stranieri, Andrew, Venkatraman, Sitalakshmi, Bagirov, Adil
- Authors: Jelinek, Herbert , Yatsko, Andrew , Stranieri, Andrew , Venkatraman, Sitalakshmi , Bagirov, Adil
- Date: 2015
- Type: Text , Journal article
- Relation: Artificial Intelligence Research Vol. 4, no. 1 (2015), p. 22-35
- Full Text:
- Reviewed:
- Description: Missing values may be present in data without undermining its use for diagnostic / classification purposes but compromise application of readily available software. Surrogate entries can remedy the situation, although the outcome is generally unknown. Discretization of continuous attributes renders all data nominal and is helpful in dealing with missing values; particularly, no special handling is required for different attribute types. A number of classifiers exist or can be reformulated for this representation. Some classifiers can be reinvented as data completion methods. In this work the Decision Tree, Nearest Neighbour, and Naive Bayesian methods are demonstrated to have the required aptness. An approach is implemented whereby the entered missing values are not necessarily a close match of the true data; however, they intend to cause the least hindrance for classification. The proposed techniques find their application particularly in medical diagnostics. Where clinical data represents a number of related conditions, taking Cartesian product of class values of the underlying sub-problems allows narrowing down of the selection of missing value substitutes. Real-world data examples, some publically available, are enlisted for testing. The proposed and benchmark methods are compared by classifying the data before and after missing value imputation, indicating a significant improvement.
- Authors: Jelinek, Herbert , Yatsko, Andrew , Stranieri, Andrew , Venkatraman, Sitalakshmi , Bagirov, Adil
- Date: 2015
- Type: Text , Journal article
- Relation: Artificial Intelligence Research Vol. 4, no. 1 (2015), p. 22-35
- Full Text:
- Reviewed:
- Description: Missing values may be present in data without undermining its use for diagnostic / classification purposes but compromise application of readily available software. Surrogate entries can remedy the situation, although the outcome is generally unknown. Discretization of continuous attributes renders all data nominal and is helpful in dealing with missing values; particularly, no special handling is required for different attribute types. A number of classifiers exist or can be reformulated for this representation. Some classifiers can be reinvented as data completion methods. In this work the Decision Tree, Nearest Neighbour, and Naive Bayesian methods are demonstrated to have the required aptness. An approach is implemented whereby the entered missing values are not necessarily a close match of the true data; however, they intend to cause the least hindrance for classification. The proposed techniques find their application particularly in medical diagnostics. Where clinical data represents a number of related conditions, taking Cartesian product of class values of the underlying sub-problems allows narrowing down of the selection of missing value substitutes. Real-world data examples, some publically available, are enlisted for testing. The proposed and benchmark methods are compared by classifying the data before and after missing value imputation, indicating a significant improvement.
Feature selection using misclassification counts
- Bagirov, Adil, Yatsko, Andrew, Stranieri, Andrew
- Authors: Bagirov, Adil , Yatsko, Andrew , Stranieri, Andrew
- Date: 2011
- Type: Conference proceedings , Unpublished work
- Relation: Proceedings of the 9th Australasian Data Mining Conference (AusDM 2011), 51-62. Conferences in Research and Practice in Information Technology (CRPIT), Vol. 121.
- Full Text:
- Description: Dimensionality reduction of the problem space through detection and removal of variables, contributing little or not at all to classification, is able to relieve the computational load and instance acquisition effort, considering all the data attributes accessed each time around. The approach to feature selection in this paper is based on the concept of coherent accumulation of data about class centers with respect to coordinates of informative features. Ranking is done on the degree to which different variables exhibit random characteristics. The results are being verified using the Nearest Neighbor classifier. This also helps to address the feature irrelevance and redundancy, what ranking does not immediately decide. Additionally, feature ranking methods from different independent sources are called in for the direct comparison.
- Description: Dimensionality reduction of the problem space through detection and removal of variables, contributing little or not at all to classification, is able to relieve the computational load and the data acquisition effort, considering all data components being accessed each time around. The approach to feature selection in this paper is based on the concept of coherent accumulation of data about class centers with respect to coordinates of informative features. Ranking is done on the degree, to which different variables exhibit random characteristics. The results are being verified using the Nearest Neighbor classifier. This also helps to address the feature irrelevance, what ranking does not immediately decide. Additionally, feature ranking methods available from different independent sources are called in for direct comparison.
- Authors: Bagirov, Adil , Yatsko, Andrew , Stranieri, Andrew
- Date: 2011
- Type: Conference proceedings , Unpublished work
- Relation: Proceedings of the 9th Australasian Data Mining Conference (AusDM 2011), 51-62. Conferences in Research and Practice in Information Technology (CRPIT), Vol. 121.
- Full Text:
- Description: Dimensionality reduction of the problem space through detection and removal of variables, contributing little or not at all to classification, is able to relieve the computational load and instance acquisition effort, considering all the data attributes accessed each time around. The approach to feature selection in this paper is based on the concept of coherent accumulation of data about class centers with respect to coordinates of informative features. Ranking is done on the degree to which different variables exhibit random characteristics. The results are being verified using the Nearest Neighbor classifier. This also helps to address the feature irrelevance and redundancy, what ranking does not immediately decide. Additionally, feature ranking methods from different independent sources are called in for the direct comparison.
- Description: Dimensionality reduction of the problem space through detection and removal of variables, contributing little or not at all to classification, is able to relieve the computational load and the data acquisition effort, considering all data components being accessed each time around. The approach to feature selection in this paper is based on the concept of coherent accumulation of data about class centers with respect to coordinates of informative features. Ranking is done on the degree, to which different variables exhibit random characteristics. The results are being verified using the Nearest Neighbor classifier. This also helps to address the feature irrelevance, what ranking does not immediately decide. Additionally, feature ranking methods available from different independent sources are called in for direct comparison.
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