- Title
- A pilot comparison of fixatives for hookworm real-time polymerase chain reaction
- Creator
- Bradbury, Richard; Inagaki, Kengo; Singh, Gurbaksh; Agana, Urita; Patterson, Kayla; Malloch, Lacy; Rodriguez, Eduardo; Qvarnstrom, Yvonne; Hobbs, Charlotte
- Date
- 2023
- Type
- Text; Journal article
- Identifier
- http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/193457
- Identifier
- vital:18157
- Identifier
-
https://doi.org/10.4269/ajtmh.22-0406
- Identifier
- ISSN:0002-9637 (ISSN)
- Abstract
- Polymerase chain reaction (PCR) is increasingly used in the diagnosis of soil-transmitted helminth infections. Despite this, few studies have evaluated the impact of different fecal fixatives on the outcome of fecal helminth qPCR analysis, and none have evaluated the effect of commercial parasitology fixatives commonly used in diagnostic laboratories. We fixed dog feces containing Ancylostoma spp. hookworm eggs in zinc polyvinyl alcohol (Zn-PVA) and Total-Fix, and with 70% ethanol (EtOH) as a control. DNA was extracted at timepoints 11, 33, 64, and 94 days and subjected to Ancylostoma spp. quantitative PCR (qPCR). A linear regression model was created to assess the effect of preservative types on the temporal change of qPCR quantification cycle number (Cq) values, accounting for variances among individual animals. Fixation in 70% EtOH least affected Cq values over 94 days. Total-Fix preservation yielded a higher Cq overall, but there was no significant difference compared with 70% EtOH fixation. Fixation in Zn-PVA resulted in significantly (P < 0.001) higher Cq values than 70% EtOH after only 33 days and loss of amplification at 64 days. Consistent with other helminth fixation studies, 70% EtOH performed well in preserving hookworm DNA over 94 days. Total-Fix provided a comparable alternative for qPCR analysis for hookworm. Fixation in Zn-PVA resulted in loss of detectable hookworm DNA at 64 days, as determined by qPCR. Copyright © 2023 The American Society of Tropical Medicine and Hygiene.
- Publisher
- American Society of Tropical Medicine and Hygiene
- Relation
- American Journal of Tropical Medicine and Hygiene Vol. 108, no. 2 (2023), p. 335-339
- Rights
- All metadata describing materials held in, or linked to, the repository is freely available under a CC0 licence
- Rights
- Copyright © 2023 The American Society of Tropical Medicine and Hygiene
- Rights
- Open Access
- Subject
- 32 Biomedical and clinical sciences; 42 Health sciences
- Full Text
- Reviewed
- Funder
- This work was funded by the University of Mississippi Vice Chancellor’s Office for Research (CVH). The CDC provided laboratory support for PCR
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