Description:
Studies into the mechanisms underlying the active emmetropization process by which neonatal refractive errors are corrected, have described rapid, compensatory changes in the thickness of the choroidal layer in response to imposed optical defocus. While high frequency A-scan ultrasonography, as traditionally used to characterize such changes, offers good resolution of central (on-axis) changes, evidence of local retinal control mechanisms make it imperative that more peripheral, off-axis changes also be tracked. In this study, we used in vivo high resolution spectral domain-optical coherence tomography (SD-OCT) imaging in combination with the Iowa Reference Algorithms for 3-dimensional segmentation, to more fully characterize these changes, both spatially and temporally, in young, 7-day old chicks (n = 15), which were fitted with monocular +15 D defocusing lenses to induce choroidal thickening. With these tools, we were also able to localize the retinal area centralis, which was used as a landmark along with the ocular pectin in standardizing the location of scans and aligning them for subsequent analyses of choroidal thickness (CT) changes across time and between eyes. Values were derived for each of four quadrants, centered on the area centralis, and global CT values were also derived for all eyes. Data were compared with on-axis changes measured using ultrasonography. There were significant on-axis choroidal thickening that was detected after just one day of lens wear (
Description:
The process of meaningful image object identification is the critical first step in the extraction of image information for computer vision and image understanding. The disjoint regions correspond to visually distinct objects in a scene. In this particular work, we investigate and propose a novel stochastic model based approach to implement a robust unsupervised color image content understanding technique that segments a color textured image into its constituent parts automatically and meaningfully. The aim of this work is to produce precise segmentation of different objects in a color image using color information, texture information and neighborhood relationships among neighboring image pixels in terms of their features using Markov Random Field (MRF) Model to get the maximum accuracy in segmentation. The evaluation of the results is done through comparison of the segmentation quality and accuracy with another similar existing method which demonstrates that the proposed approach outperforms the existing method by achieving better segmentation accuracy with faithful segmentation results.
Description:
This paper presents a new method for segmentation of LIDAR point cloud data for automatic building extraction. Using the ground height from a DEM (Digital Elevation Model), the non-ground points (mainly buildings and trees) are separated from the ground points. Points on walls are removed from the set of non-ground points by applying the following two approaches: If a plane fitted at a point and its neighbourhood is perpendicular to a fictitious horizontal plane, then this point is designated as a wall point. When LIDAR points are projected on a dense grid, points within a narrow area close to an imaginary vertical line on the wall should fall into the same grid cell. If three or more points fall into the same cell, then the intermediate points are removed as wall points. The remaining non-ground points are then divided into clusters based on height and local neighbourhood. One or more clusters are initialised based on the maximum height of the points and then each cluster is extended by applying height and neighbourhood constraints. Planar roof segments are extracted from each cluster of points following a region-growing technique. Planes are initialised using coplanar points as seed points and then grown using plane compatibility tests. If the estimated height of a point is similar to its LIDAR generated height, or if its normal distance to a plane is within a predefined limit, then the point is added to the plane. Once all the planar segments are extracted, the common points between the neghbouring planes are assigned to the appropriate planes based on the plane intersection line, locality and the angle between the normal at a common point and the corresponding plane. A rule-based procedure is applied to remove tree planes which are small in size and randomly oriented. The neighbouring planes are then merged to obtain individual building boundaries, which are regularised based on long line segments. Experimental results on ISPRS benchmark data sets show that the proposed method offers higher building detection and roof plane extraction rates than many existing methods, especially in complex urban scenes.
Description:
This paper presents a new method for segmentation of LIDAR point cloud data for automatic building extraction. Using the ground height from a DEM (Digital Elevation Model), the non-ground points (mainly buildings and trees) are separated from the ground points. Points on walls are removed from the set of non-ground points by applying the following two approaches: If a plane fitted at a point and its neighbourhood is perpendicular to a fictitious horizontal plane, then this point is designated as a wall point. When LIDAR points are projected on a dense grid, points within a narrow area close to an imaginary vertical line on the wall should fall into the same grid cell. If three or more points fall into the same cell, then the intermediate points are removed as wall points. The remaining non-ground points are then divided into clusters based on height and local neighbourhood. One or more clusters are initialised based on the maximum height of the points and then each cluster is extended by applying height and neighbourhood constraints. Planar roof segments are extracted from each cluster of points following a region-growing technique. Planes are initialised using coplanar points as seed points and then grown using plane compatibility tests. If the estimated height of a point is similar to its LIDAR generated height, or if its normal distance to a plane is within a predefined limit, then the point is added to the plane. Once all the planar segments are extracted, the common points between the neghbouring planes are assigned to the appropriate planes based on the plane intersection line, locality and the angle between the normal at a common point and the corresponding plane. A rule-based procedure is applied to remove tree planes which are small in size and randomly oriented. The neighbouring planes are then merged to obtain individual building boundaries, which are regularised based on long line segments. Experimental results on ISPRS benchmark data sets show that the proposed method offers higher building detection and roof plane extraction rates than many existing methods, especially in complex urban scenes.
Description:
The use of spectral-domain optical coherence tomography (SD-OCT) is becoming commonplace for the in vivo longitudinal study of murine models of ophthalmic disease. Longitudinal studies, however, generate large quantities of data, the manual analysis of which is very challenging due to the time-consuming nature of generating delineations. Thus, it is of importance that automated algorithms be developed to facilitate accurate and timely analysis of these large datasets. Furthermore, as the models target a variety of diseases, the associated structural changes can also be extremely disparate. For instance, in the light damage (LD) model, which is frequently used to study photoreceptor degeneration, the outer retina appears dramatically different from the normal retina. To address these concerns, we have developed a flexible graph-based algorithm for the automated segmentation of mouse OCT volumes (ASiMOV). This approach incorporates a machine-learning component that can be easily trained for different disease models. To validate ASiMOV, the automated results were compared to manual delineations obtained from three raters on healthy and BALB/cJ mice post LD. It was also used to study a longitudinal LD model, where five control and five LD mice were imaged at four timepoints post LD. The total retinal thickness and the outer retina (comprising the outer nuclear layer, and inner and outer segments of the photoreceptors) were unchanged the day after the LD, but subsequently thinned significantly (p < 0.01). The retinal nerve fiber-ganglion cell complex and the inner plexiform layers, however, remained unchanged for the duration of the study.
Description:
The use of spectral-domain optical coherence tomography (SD-OCT) is becoming commonplace for the in vivo longitudinal study of murine models of ophthalmic disease. Longitudinal studies, however, generate large quantities of data, the manual analysis of which is very challenging due to the time-consuming nature of generating delineations. Thus, it is of importance that automated algorithms be developed to facilitate accurate and timely analysis of these large datasets. Furthermore, as the models target a variety of diseases, the associated structural changes can also be extremely disparate. For instance, in the light damage (LD) model, which is frequently used to study photoreceptor degeneration, the outer retina appears dramatically different from the normal retina. To address these concerns, we have developed a flexible graph-based algorithm for the automated segmentation of mouse OCT volumes (ASiMOV). This approach incorporates a machine-learning component that can be easily trained for different disease models. To validate ASiMOV, the automated results were compared to manual delineations obtained from three raters on healthy and BALB/cJ mice post LD. It was also used to study a longitudinal LD model, where five control and five LD mice were imaged at four timepoints post LD. The total retinal thickness and the outer retina (comprising the outer nuclear layer, and inner and outer segments of the photoreceptors) were unchanged the day after the LD, but subsequently thinned significantly (p < 0.01). The retinal nerve fiber-ganglion cell complex and the inner plexiform layers, however, remained unchanged for the duration of the study.
Description:
Purpose: Academic research and consumer polls often report strong consumer support for environmentally responsible products (ERPs), and yet the proportion of sales they account for is often comparatively small. The purpose of this paper is to address one of the purported reasons behind this “attitude-behaviour gap” by measuring the influence of six relatively untested factors on consumer attitudes towards environmentally responsible clothing (ERC). Design/methodology/approach: This study employed a consumer household sample. It also used a quantitative survey approach to collect its data and structural equation modelling to analyse it. Findings: Of the six factors, four were found to have a significant influence on consumer attitudes: altruism, status enhancement, perceived consumer effectiveness (PCE) and happiness. Originality/value: Altruism, environmental concern, PCE and self-identity have consistently featured in other environmental contexts, but less so in the specific context of ERC. Happiness and status enhancement have yet to appear in any study relating to the purchase of ERPs.
Description:
Purpose: Academic research and consumer polls often report strong consumer support for environmentally responsible products (ERPs), and yet the proportion of sales they account for is often comparatively small. The purpose of this paper is to address one of the purported reasons behind this “attitude-behaviour gap” by measuring the influence of six relatively untested factors on consumer attitudes towards environmentally responsible clothing (ERC). Design/methodology/approach: This study employed a consumer household sample. It also used a quantitative survey approach to collect its data and structural equation modelling to analyse it. Findings: Of the six factors, four were found to have a significant influence on consumer attitudes: altruism, status enhancement, perceived consumer effectiveness (PCE) and happiness. Originality/value: Altruism, environmental concern, PCE and self-identity have consistently featured in other environmental contexts, but less so in the specific context of ERC. Happiness and status enhancement have yet to appear in any study relating to the purchase of ERPs.
Description:
Building detection in complex scenes is a non-trivial exercise due to building shape variability, irregular terrain, shadows, and occlusion by highly dense vegetation. In this research, we present a graph based algorithm, which combines multispectral imagery and airborne LiDAR information to completely delineate the building boundaries in urban and densely vegetated area. In the first phase, LiDAR data is divided into two groups: ground and non-ground data, using ground height from a bare-earth DEM. A mask, known as the primary building mask, is generated from the non-ground LiDAR points where the black region represents the elevated area (buildings and trees), while the white region describes the ground (earth). The second phase begins with the process of Connected Component Analysis (CCA) where the number of objects present in the test scene are identified followed by initial boundary detection and labelling. Additionally, a graph from the connected components is generated, where each black pixel corresponds to a node. An edge of a unit distance is defined between a black pixel and a neighbouring black pixel, if any. An edge does not exist from a black pixel to a neighbouring white pixel, if any. This phenomenon produces a disconnected components graph, where each component represents a prospective building or a dense vegetation (a contiguous block of black pixels from the primary mask). In the third phase, a clustering process clusters the segmented lines, extracted from multispectral imagery, around the graph components, if possible. In the fourth step, NDVI, image entropy, and LiDAR data are utilised to discriminate between vegetation, buildings, and isolated building's occluded parts. Finally, the initially extracted building boundary is extended pixel-wise using NDVI, entropy, and LiDAR data to completely delineate the building and to maximise the boundary reach towards building edges. The proposed technique is evaluated using two Australian data sets: Aitkenvale and Hervey Bay, for object-based and pixel-based completeness, correctness, and quality. The proposed technique detects buildings larger than 50 m2 and 10 m2 in the Aitkenvale site with 100% and 91% accuracy, respectively, while in the Hervey Bay site it performs better with 100% accuracy for buildings larger than 10 m2 in area.
Description:
Building detection in complex scenes is a non-trivial exercise due to building shape variability, irregular terrain, shadows, and occlusion by highly dense vegetation. In this research, we present a graph based algorithm, which combines multispectral imagery and airborne LiDAR information to completely delineate the building boundaries in urban and densely vegetated area. In the first phase, LiDAR data is divided into two groups: ground and non-ground data, using ground height from a bare-earth DEM. A mask, known as the primary building mask, is generated from the non-ground LiDAR points where the black region represents the elevated area (buildings and trees), while the white region describes the ground (earth). The second phase begins with the process of Connected Component Analysis (CCA) where the number of objects present in the test scene are identified followed by initial boundary detection and labelling. Additionally, a graph from the connected components is generated, where each black pixel corresponds to a node. An edge of a unit distance is defined between a black pixel and a neighbouring black pixel, if any. An edge does not exist from a black pixel to a neighbouring white pixel, if any. This phenomenon produces a disconnected components graph, where each component represents a prospective building or a dense vegetation (a contiguous block of black pixels from the primary mask). In the third phase, a clustering process clusters the segmented lines, extracted from multispectral imagery, around the graph components, if possible. In the fourth step, NDVI, image entropy, and LiDAR data are utilised to discriminate between vegetation, buildings, and isolated building's occluded parts. Finally, the initially extracted building boundary is extended pixel-wise using NDVI, entropy, and LiDAR data to completely delineate the building and to maximise the boundary reach towards building edges. The proposed technique is evaluated using two Australian data sets: Aitkenvale and Hervey Bay, for object-based and pixel-based completeness, correctness, and quality. The proposed technique detects buildings larger than 50 m2 and 10 m2 in the Aitkenvale site with 100% and 91% accuracy, respectively, while in the Hervey Bay site it performs better with 100% accuracy for buildings larger than 10 m2 in area.
Description:
Roof plane segmentation is a complex task since point cloud data carry no connection information and do not provide any semantic characteristics of the underlying scanned surfaces. Point cloud density, complex roof profiles, and occlusion add another layer of complexity which often encounter in practice. In this article, we present a new technique that provides a better interpolation of roof regions where multiple surfaces intersect creating non-manifold points. As a result, these geometric features are preserved to achieve automated identification and segmentation of the roof planes from unstructured laser data. The proposed technique has been tested using the International Society for Photogrammetry and Remote Sensing benchmark and three Australian datasets, which differ in terrain, point density, building sizes, and vegetation. The qualitative and quantitative results show the robustness of the methodology and indicate that the proposed technique can eliminate vegetation and extract buildings as well as their non-occluding parts from the complex scenes at a high success rate for building detection (between 83.9% and 100% per-object completeness) and roof plane extraction (between 73.9% and 96% per-object completeness). The proposed method works more robustly than some existing methods in the presence of occlusion and low point sampling as indicated by the correctness of above 95% for all the datasets.
Description:
Roof plane segmentation is a complex task since point cloud data carry no connection information and do not provide any semantic characteristics of the underlying scanned surfaces. Point cloud density, complex roof profiles, and occlusion add another layer of complexity which often encounter in practice. In this article, we present a new technique that provides a better interpolation of roof regions where multiple surfaces intersect creating non-manifold points. As a result, these geometric features are preserved to achieve automated identification and segmentation of the roof planes from unstructured laser data. The proposed technique has been tested using the International Society for Photogrammetry and Remote Sensing benchmark and three Australian datasets, which differ in terrain, point density, building sizes, and vegetation. The qualitative and quantitative results show the robustness of the methodology and indicate that the proposed technique can eliminate vegetation and extract buildings as well as their non-occluding parts from the complex scenes at a high success rate for building detection (between 83.9% and 100% per-object completeness) and roof plane extraction (between 73.9% and 96% per-object completeness). The proposed method works more robustly than some existing methods in the presence of occlusion and low point sampling as indicated by the correctness of above 95% for all the datasets.
Description:
Optical coherence tomography (OCT) images of the retina are a powerful tool for diagnosing and monitoring eye disease. However, they are plagued by speckle noise, which reduces image quality and reliability of assessment. This paper introduces a novel speckle reduction method inspired by the recent successes of deep learning in medical imaging. We present two versions of the network to reflect the needs and preferences of different end-users. Specifically, we train a convolution neural network to denoise cross-sections from OCT volumes of healthy eyes using either (1) mean-squared error, or (2) a generative adversarial network (GAN) with Wasserstein distance and perceptual similarity. We then interrogate the success of both methods with extensive quantitative and qualitative metrics on cross-sections from both healthy and glaucomatous eyes. The results show that the former approach provides state-of-the-art improvement in quantitative metrics such as PSNR and SSIM, and aids layer segmentation. However, the latter approach, which puts more weight on visual perception, outperformed for qualitative comparisons based on accuracy, clarity, and personal preference. Overall, our results demonstrate the effectiveness and efficiency of a deep learning approach to denoising OCT images, while maintaining subtle details in the images.
Description:
Effective building detection and roof reconstruction has an influential demand over the remote sensing research community. In this paper, we present a new automatic LiDAR point cloud segmentation method using suitable seed points for building detection and roof plane extraction. Firstly, the LiDAR point cloud is separated into "ground" and "non-ground" points based on the analysis of DEM with a height threshold. Each of the non-ground point is marked as coplanar or non-coplanar based on a coplanarity analysis. Commencing from the maximum LiDAR point height towards the minimum, all the LiDAR points on each height level are extracted and separated into several groups based on 2D distance. From each group, lines are extracted and a coplanar point which is the nearest to the midpoint of each line is considered as a seed point. This seed point and its neighbouring points are utilised to generate the plane equation. The plane is grown in a region growing fashion until no new points can be added. A robust rule-based tree removal method is applied subsequently to remove planar segments on trees. Four different rules are applied in this method. Finally, the boundary of each object is extracted from the segmented LiDAR point cloud. The method is evaluated with six different data sets consisting hilly and densely vegetated areas. The experimental results indicate that the proposed method offers a high building detection and roof plane extraction rates while compared to a recently proposed method.
Description:
Uncertain data streams have been widely generated in many Web applications. The uncertainty in data streams makes anomaly detection from sensor data streams far more challenging. In this article, we present a novel framework that supports anomaly detection in uncertain data streams. The proposed framework adopts the wavelet soft-thresholding method to remove the noises or errors in data streams. Based on the refined data streams, we develop effective period pattern recognition and feature extraction techniques to improve the computational efficiency. We use classification methods for anomaly detection in the corrected data stream. We also empirically show that the proposed approach shows a high accuracy of anomaly detection on several real datasets.
Description:
A gene regulatory network (GRN) represents a set of genes and its regulatory interactions. The inference of the regulatory interactions between genes is usually carried out using an appropriate mathematical model and the available gene expression profile. Among the various models proposed for GRN inference, our recently proposed Michaelis–Menten based ODE model provides a good trade-off between the computational complexity and biological relevance. This model, like other known GRN models, also uses an evolutionary algorithm for parameter estimation. Considering various issues associated with such population based stochastic optimization approaches (e.g. diversity, premature convergence due to local optima, accuracy, etc.), it becomes important to seed the initial population with good individuals which are closer to the optimal solution. In this paper, we exploit the inherent strength of principal component analysis (PCA) in a novel manner to initialize the population for GRN optimization. The benefit of the proposed method is validated by reconstructing in silico and in vivo networks of various sizes. For the same level of accuracy, the approach with PCA based initialization shows improved convergence speed.
Description:
A gene regulatory network (GRN) represents a set of genes and its regulatory interactions. The inference of the regulatory interactions between genes is usually carried out using an appropriate mathematical model and the available gene expression profile. Among the various models proposed for GRN inference, our recently proposed Michaelis–Menten based ODE model provides a good trade-off between the computational complexity and biological relevance. This model, like other known GRN models, also uses an evolutionary algorithm for parameter estimation. Considering various issues associated with such population based stochastic optimization approaches (e.g. diversity, premature convergence due to local optima, accuracy, etc.), it becomes important to seed the initial population with good individuals which are closer to the optimal solution. In this paper, we exploit the inherent strength of principal component analysis (PCA) in a novel manner to initialize the population for GRN optimization. The benefit of the proposed method is validated by reconstructing in silico and in vivo networks of various sizes. For the same level of accuracy, the approach with PCA based initialization shows improved convergence speed.
Description:
Penetration of wind generation into power systems in recent years has greatly affected optimal power flow (OPF) because of the uncertain behavior of this new energy resource. In this research work, at first, a novel scenario generation approach is proposed to model wind power (WP) uncertainty. The proposed scenario generation approach includes construction of probability density function (PDF) pertaining to WP forecast error, segmentation of the PDF by an efficient clustering approach to obtain both the optimal number and the optimal arrangement of the clusters, and the generation of WP scenarios using the optimized clusters through roulette wheel mechanism. Secondly, this paper presents a new OPF framework based on DC network modeling for wind generation integrated power systems. Thirdly, a new out-of-sample analysis is presented to evaluate the long-run performance of the proposed OPF approach encountering various realizations of uncertain WPs. Finally, the performance of the proposed method for solving WP-integrated OPF problem is extensively illustrated on the IEEE 30-bus and the IEEE 118-bus test systems and compared with the performance of the deterministic method and the Weibull PDF method. These comparisons illustrate better performance of the proposed method, while it has reasonable computation times. •A new scenario generation approach is presented.•A new wind power integrated optimal power model is proposed.•A new out-of-sample analysis is presented.•The effectiveness of the proposed model is extensively illustrated.
Description:
The concept of Internet of Multimedia Things (IoMT) is becoming popular nowadays and can be used in various smart city applications, e.g., traffic management, healthcare, and surveillance. In the IoMT, the devices, e.g., Multimedia Sensor Nodes (MSNs), are capable of generating both multimedia and non-multimedia data. The generated data are forwarded to a cloud server via a Base Station (BS). However, it is possible that the Internet connection between the BS and the cloud server may be temporarily down. The limited computational resources restrict the MSNs from holding the captured data for a longer time. In this situation, mobile sinks can be utilized to collect data from MSNs and upload to the cloud server. However, this data collection may create privacy issues, such as revealing identities and location information of MSNs. Therefore, there is a need to preserve the privacy of MSNs during mobile data collection. In this paper, we propose an efficient privacy-preserving-based data collection and analysis (P2DCA) framework for IoMT applications. The proposed framework partitions an underlying wireless multimedia sensor network into multiple clusters. Each cluster is represented by a Cluster Head (CH). The CHs are responsible to protect the privacy of member MSNs through data and location coordinates aggregation. Later, the aggregated multimedia data are analyzed on the cloud server using a counter-propagation artificial neural network to extract meaningful information through segmentation. Experimental results show that the proposed framework outperforms the existing privacy-preserving schemes, and can be used to collect multimedia data in various IoMT applications.