Effects of digging by a native and introduced ecosystem engineer on soil physical and chemical properties in temperate grassy woodland
- Ross, Catherine, Munro, Nicola, Barton, Philip, Evans, Maldwyn, Gillen, John
- Authors: Ross, Catherine , Munro, Nicola , Barton, Philip , Evans, Maldwyn , Gillen, John
- Date: 2019
- Type: Text , Journal article
- Relation: PeerJ Vol. 2019, no. 8 (2019), p.
- Full Text:
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- Description: Temperate grasslands and woodlands are the focus of extensive restoration efforts worldwide. Reintroduction of locally extinct soil-foraging and burrowing animals has been suggested as a means to restore soil function in these ecosystems. Yet little is known about the physical and chemical effects of digging on soil over time and how these effects differ between species of digging animal, vegetation types or ecosystems. We compared foraging pits of a native reintroduced marsupial, the eastern bettong (Bettongia gaimardi) and that of the exotic European rabbit (Oryctolagus cuniculus). We simulated pits of these animals and measured pit dimensions and soil chemical properties over a period of 2 years. We showed that bettong and rabbit pits differed in their morphology and longevity, and that pits had a strong moderating effect on soil surface temperatures. Over 75% of the simulated pits were still visible after 2 years, and bettong pits infilled faster than rabbit pits. Bettong pits reduced diurnal temperature range by up to 25 ° C compared to the soil surface. We did not find any effects of digging on soil chemistry that were consistent across vegetation types, between bettong and rabbit pits, and with time since digging, which is contrary to studies conducted in arid biomes. Our findings show that animal foraging pits in temperate ecosystems cause physical alteration of the soil surface and microclimatic conditions rather than nutrient changes often observed in arid areas. © 2019 Ross et al. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
- Authors: Ross, Catherine , Munro, Nicola , Barton, Philip , Evans, Maldwyn , Gillen, John
- Date: 2019
- Type: Text , Journal article
- Relation: PeerJ Vol. 2019, no. 8 (2019), p.
- Full Text:
- Reviewed:
- Description: Temperate grasslands and woodlands are the focus of extensive restoration efforts worldwide. Reintroduction of locally extinct soil-foraging and burrowing animals has been suggested as a means to restore soil function in these ecosystems. Yet little is known about the physical and chemical effects of digging on soil over time and how these effects differ between species of digging animal, vegetation types or ecosystems. We compared foraging pits of a native reintroduced marsupial, the eastern bettong (Bettongia gaimardi) and that of the exotic European rabbit (Oryctolagus cuniculus). We simulated pits of these animals and measured pit dimensions and soil chemical properties over a period of 2 years. We showed that bettong and rabbit pits differed in their morphology and longevity, and that pits had a strong moderating effect on soil surface temperatures. Over 75% of the simulated pits were still visible after 2 years, and bettong pits infilled faster than rabbit pits. Bettong pits reduced diurnal temperature range by up to 25 ° C compared to the soil surface. We did not find any effects of digging on soil chemistry that were consistent across vegetation types, between bettong and rabbit pits, and with time since digging, which is contrary to studies conducted in arid biomes. Our findings show that animal foraging pits in temperate ecosystems cause physical alteration of the soil surface and microclimatic conditions rather than nutrient changes often observed in arid areas. © 2019 Ross et al. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
Avian functional responses to landscape recovery
- Ikin, Karen, Barton, Philip, Blanchard, Wade, Crane, Mason, Stein, John, Lindenmayer, David
- Authors: Ikin, Karen , Barton, Philip , Blanchard, Wade , Crane, Mason , Stein, John , Lindenmayer, David
- Date: 2019
- Type: Text , Journal article
- Relation: Proceedings of the Royal Society B: Biological Sciences Vol. 286, no. 1901 (2019), p.
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- Description: Restoring native vegetation in agricultural landscapes can reverse biodiversity declines via species gains. Depending on whether the traits of colonizers are complementary or redundant to the assemblage, species gains can increase the efficiency or stability of ecological functions, yet detecting these processes is not straightforward.We propose a new conceptual model to identify potential changes to complementarity and redundancy in response to landscape change via relative changes in taxonomic and functional richness.We applied our model to a 14-year study of birds across an extensive agricultural region. We found compelling evidence that high levels of landscape-scale tree cover and patch-scale restoration were significant determinants of functional change in the overall bird assemblage. This was true for every one of the six traits investigated individually, indicating increased trait-specific functional complementarity and redundancy in the assemblage. Applying our conceptual model to species diversity data provided new insights into how the return of vertebrates to restored landscapes may affect ecological function. © 2019 The Author(s).
- Authors: Ikin, Karen , Barton, Philip , Blanchard, Wade , Crane, Mason , Stein, John , Lindenmayer, David
- Date: 2019
- Type: Text , Journal article
- Relation: Proceedings of the Royal Society B: Biological Sciences Vol. 286, no. 1901 (2019), p.
- Full Text:
- Reviewed:
- Description: Restoring native vegetation in agricultural landscapes can reverse biodiversity declines via species gains. Depending on whether the traits of colonizers are complementary or redundant to the assemblage, species gains can increase the efficiency or stability of ecological functions, yet detecting these processes is not straightforward.We propose a new conceptual model to identify potential changes to complementarity and redundancy in response to landscape change via relative changes in taxonomic and functional richness.We applied our model to a 14-year study of birds across an extensive agricultural region. We found compelling evidence that high levels of landscape-scale tree cover and patch-scale restoration were significant determinants of functional change in the overall bird assemblage. This was true for every one of the six traits investigated individually, indicating increased trait-specific functional complementarity and redundancy in the assemblage. Applying our conceptual model to species diversity data provided new insights into how the return of vertebrates to restored landscapes may affect ecological function. © 2019 The Author(s).
Individual and occupational differences in perceived organisational culture of a central hospital in vietnam
- Nguyen, Huy, Nguyen, Au, Nguyen, Thu, Nguyen, Ha, Bui, Hien
- Authors: Nguyen, Huy , Nguyen, Au , Nguyen, Thu , Nguyen, Ha , Bui, Hien
- Date: 2018
- Type: Text , Journal article
- Relation: BioMed Research International Vol. 2018, no. (2018), p.
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- Description: Many hospitals in developing countries, including Vietnam, are facing the challenges of increasingly noncommunicable diseases and the financial autonomy policy from the government. To adapt to this new context requires understanding and changing the current organisational culture of the hospitals. However, little has been known about this in resource-constrained healthcare settings. The objectives of this study were to examine the four characteristics of the organisational culture and test selected individual and occupational differences in the organisational culture of a Vietnam central hospital. In a cross-sectional study using the Organisation Culture Assessment Instrument (OCAI) with the Competing Value Framework (CVF), including 4 factors, Clan, Adhocracy, Hierarchy, and Market, health workers currently working at Quang Nam General Hospital were interviewed. The results indicated the current cultural model was more internally focused with two dominant cultures, Clan and Hierarchy, while, for the desired model, the Clan culture was the most expected one. Comparing between the current and desired pattern, the down trend was found for all types of culture, except the Clan culture, and there were significant differences by domains of organisational culture. Furthermore, the current and desired models were differently distributed by key individual characteristics. These differences have raised a number of interesting directions for future research. They also suggest that, to build a hospital organisational culture to suit both current and future contexts as per employees' assessment and expectation, it is important to take individual and institutional variations into account. © 2018 Huy Nguyen Van et al. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Huy Nguyen” is provided in this record**
- Authors: Nguyen, Huy , Nguyen, Au , Nguyen, Thu , Nguyen, Ha , Bui, Hien
- Date: 2018
- Type: Text , Journal article
- Relation: BioMed Research International Vol. 2018, no. (2018), p.
- Full Text:
- Reviewed:
- Description: Many hospitals in developing countries, including Vietnam, are facing the challenges of increasingly noncommunicable diseases and the financial autonomy policy from the government. To adapt to this new context requires understanding and changing the current organisational culture of the hospitals. However, little has been known about this in resource-constrained healthcare settings. The objectives of this study were to examine the four characteristics of the organisational culture and test selected individual and occupational differences in the organisational culture of a Vietnam central hospital. In a cross-sectional study using the Organisation Culture Assessment Instrument (OCAI) with the Competing Value Framework (CVF), including 4 factors, Clan, Adhocracy, Hierarchy, and Market, health workers currently working at Quang Nam General Hospital were interviewed. The results indicated the current cultural model was more internally focused with two dominant cultures, Clan and Hierarchy, while, for the desired model, the Clan culture was the most expected one. Comparing between the current and desired pattern, the down trend was found for all types of culture, except the Clan culture, and there were significant differences by domains of organisational culture. Furthermore, the current and desired models were differently distributed by key individual characteristics. These differences have raised a number of interesting directions for future research. They also suggest that, to build a hospital organisational culture to suit both current and future contexts as per employees' assessment and expectation, it is important to take individual and institutional variations into account. © 2018 Huy Nguyen Van et al. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Huy Nguyen” is provided in this record**
Cross-taxonomic surrogates for biodiversity conservation in human-modified landscapes – A multi-taxa approach
- Yong, Ding, Barton, Philip, Ikin, Karen, Evans, Maldwyn, Crane, Mason
- Authors: Yong, Ding , Barton, Philip , Ikin, Karen , Evans, Maldwyn , Crane, Mason
- Date: 2018
- Type: Text , Journal article
- Relation: Biological Conservation Vol. 224, no. (2018), p. 336-346
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- Description: Cross-taxonomic surrogates are often used in conservation planning because inventorying large suites of taxa is either not feasible or too costly. However, cross-taxonomic surrogates are seldom tested rigorously using both correlational and representation-based approaches at the spatial scales at which conservation management occurs. Here, we evaluated the effectiveness of five ecologically contrasting taxa (birds, herpetofauna, wild bees, beetles, trees) as cross-taxonomic surrogates in native woodland patches within a heavily modified, farming and plantation-dominated landscape. We first compared species richness and compositional heterogeneity across taxa before testing for cross-taxonomic congruence using a correlative approach. We then quantified how well each taxon incidentally represented other taxa in their best patch sets, and the costs of doing so using a complementarity-based approach. We found significant pairwise associations between some taxa (birds, bees), but no single taxon was strongly correlated with all other taxa. Woodland patch sets prioritised for beetles represented other taxa best, followed by birds, but were the costliest and required the largest amount of woodland. This contrasted with patch sets prioritised for wild bees or herpetofauna, which achieved higher representation of other taxa at lower costs. Our study highlighted the influence of taxon-specific patterns of diversity and heterogeneity on how remnant vegetation patches should be prioritised for conservation, a consideration not immediately obvious in correlative analyses of surrogacy. Second, taxa that are not the most speciose (e.g. wild bees) can be efficient surrogates, achieving higher incidental representation for other taxa at lower costs. Thus, while species-rich taxa are ideal as surrogates for prioritising conservation, conservation planners should not overlook the potential of less speciose taxa such as bees, while considering the cost-effectiveness of surveying multiple different taxa. © 2018. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton" is provided in this record**
- Authors: Yong, Ding , Barton, Philip , Ikin, Karen , Evans, Maldwyn , Crane, Mason
- Date: 2018
- Type: Text , Journal article
- Relation: Biological Conservation Vol. 224, no. (2018), p. 336-346
- Full Text:
- Reviewed:
- Description: Cross-taxonomic surrogates are often used in conservation planning because inventorying large suites of taxa is either not feasible or too costly. However, cross-taxonomic surrogates are seldom tested rigorously using both correlational and representation-based approaches at the spatial scales at which conservation management occurs. Here, we evaluated the effectiveness of five ecologically contrasting taxa (birds, herpetofauna, wild bees, beetles, trees) as cross-taxonomic surrogates in native woodland patches within a heavily modified, farming and plantation-dominated landscape. We first compared species richness and compositional heterogeneity across taxa before testing for cross-taxonomic congruence using a correlative approach. We then quantified how well each taxon incidentally represented other taxa in their best patch sets, and the costs of doing so using a complementarity-based approach. We found significant pairwise associations between some taxa (birds, bees), but no single taxon was strongly correlated with all other taxa. Woodland patch sets prioritised for beetles represented other taxa best, followed by birds, but were the costliest and required the largest amount of woodland. This contrasted with patch sets prioritised for wild bees or herpetofauna, which achieved higher representation of other taxa at lower costs. Our study highlighted the influence of taxon-specific patterns of diversity and heterogeneity on how remnant vegetation patches should be prioritised for conservation, a consideration not immediately obvious in correlative analyses of surrogacy. Second, taxa that are not the most speciose (e.g. wild bees) can be efficient surrogates, achieving higher incidental representation for other taxa at lower costs. Thus, while species-rich taxa are ideal as surrogates for prioritising conservation, conservation planners should not overlook the potential of less speciose taxa such as bees, while considering the cost-effectiveness of surveying multiple different taxa. © 2018. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton" is provided in this record**
- Ng, Katherine, Barton, Philip, Macfadyen, Sarina, Lindenmayer, David, Driscoll, Don
- Authors: Ng, Katherine , Barton, Philip , Macfadyen, Sarina , Lindenmayer, David , Driscoll, Don
- Date: 2018
- Type: Text , Journal article
- Relation: Landscape Ecology Vol. 33, no. 1 (2018), p. 109-125
- Full Text: false
- Reviewed:
- Description: Context: Farming practices influence the degree of contrast between adjoining habitats, with consequences for biodiversity and species movement. Little is known, however, on insect community responses to different kinds of edges over time, and the extent of cross-habitat movement in agricultural landscapes. Objective: To determine temporal changes in beetle responses to different farmland-woodland edges, and document cross-habitat movement. Methods: We examined species richness, abundance, and movement across edges between remnant woodlands and four farmland uses (plantings, fallow, annual crops, woody debris applied over crops post-harvest) in southeastern Australia. We used directional pitfall traps to infer movement, and sampled at edges, and 20 and 200 m on both sides of edges, during spring and summer. Results: Detritivore and predator abundance varied between seasons across the edge between woodlands and all farmlands, but seasonal differences were weaker for fallow-woodland and woody debris-woodland edges. Detritivores moved from farmlands towards woodlands, but not across fallow-woodlands and woody debris-woodlands edges during summer. During summer, predators showed short-range movement towards edges from all farmlands except plantings, and towards woody debris from woodlands. Edges showed temporally stable predator richness and higher herbivore richness than adjoining habitats. Conclusions: Farmland use and season interactively affect beetle abundance across farmland-woodland edges. Woody debris can reduce seasonal fluctuations in beetle edge responses and increase permeability for cross-habitat movement, while plantings provide habitat during summer. Edges provide important resources for beetles in adjoining habitats, however, seasonal movement of predators specifically into edges may affect prey assemblages—a link requiring further study. © 2017, Springer Science+Business Media B.V.
Tests of predictions associated with temporal changes in Australian bird populations
- Lindenmayer, David, Lane, Peter, Westgate, Martin, Scheele, Ben, Barton, Philip
- Authors: Lindenmayer, David , Lane, Peter , Westgate, Martin , Scheele, Ben , Barton, Philip
- Date: 2018
- Type: Text , Journal article
- Relation: Biological Conservation Vol. 222, no. (2018), p. 212-221
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- Description: Global biodiversity loss is the cumulative result of local species declines. To combat biodiversity loss, detailed information on the temporal trends of at-risk species at local scales is needed. Here we report the results of a 13-year study of temporal change in bird occupancy in one of the most heavily modified biomes worldwide; the temperate woodlands of south-eastern Australia. We sought to determine if temporal changes in bird species were different between three broad native vegetation types (old-growth woodland, regrowth woodland and restoration plantings) and between species traits (body size, migratory status, rarity, woodland dependency, or diet). We found evidence of decline for over a quarter of all bird species for which we had sufficient data for detailed analysis (30 out of 108 species). In contrast, only 14 species increased significantly. Temporal change of birds was linked to life-history attributes, with patterns often being habitat-dependent. Nectarivores and large-bodied birds declined across all vegetation types, whereas small-bodied species increased, particularly in restoration plantings. Contrasting with patterns documented elsewhere, resident but not migratory species declined, with this trend strongest in restoration plantings. Finally, our analyses showed that, as a group, common birds tended to decline whereas rare birds tended to increase, with effects for both most pronounced in restoration plantings. Our results highlight the benefit of targeted restoration planting for some species, but also demonstrate that many common species that have long-persisted in human-dominated landscapes are experiencing severe declines. © 2018 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
- Authors: Lindenmayer, David , Lane, Peter , Westgate, Martin , Scheele, Ben , Barton, Philip
- Date: 2018
- Type: Text , Journal article
- Relation: Biological Conservation Vol. 222, no. (2018), p. 212-221
- Full Text:
- Reviewed:
- Description: Global biodiversity loss is the cumulative result of local species declines. To combat biodiversity loss, detailed information on the temporal trends of at-risk species at local scales is needed. Here we report the results of a 13-year study of temporal change in bird occupancy in one of the most heavily modified biomes worldwide; the temperate woodlands of south-eastern Australia. We sought to determine if temporal changes in bird species were different between three broad native vegetation types (old-growth woodland, regrowth woodland and restoration plantings) and between species traits (body size, migratory status, rarity, woodland dependency, or diet). We found evidence of decline for over a quarter of all bird species for which we had sufficient data for detailed analysis (30 out of 108 species). In contrast, only 14 species increased significantly. Temporal change of birds was linked to life-history attributes, with patterns often being habitat-dependent. Nectarivores and large-bodied birds declined across all vegetation types, whereas small-bodied species increased, particularly in restoration plantings. Contrasting with patterns documented elsewhere, resident but not migratory species declined, with this trend strongest in restoration plantings. Finally, our analyses showed that, as a group, common birds tended to decline whereas rare birds tended to increase, with effects for both most pronounced in restoration plantings. Our results highlight the benefit of targeted restoration planting for some species, but also demonstrate that many common species that have long-persisted in human-dominated landscapes are experiencing severe declines. © 2018 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
Conservation conundrums and the challenges of managing unexplained declines of multiple species
- Lindenmayer, David, Wood, Jeff, MacGregor, Christopher, Foster, Claire, Barton, Philip
- Authors: Lindenmayer, David , Wood, Jeff , MacGregor, Christopher , Foster, Claire , Barton, Philip
- Date: 2018
- Type: Text , Journal article
- Relation: Biological Conservation Vol. 221, no. (2018), p. 279-292
- Full Text:
- Reviewed:
- Description: The conventional approach to conserving threatened biota is to identify drivers of decline, instigate actions to mitigate threatening processes, and monitor interventions to test their effectiveness and ensure target species recover. In Australia, predation by introduced predators is a threatening process for many native mammals. Here we report the results of a 15 year monitoring study in an iconic Australian reserve, Booderee National Park, where exotic Red Fox (Vulpes vulpes) populations have been controlled through an intensive poison baiting program since 2003. Unexpectedly, we documented the collapse of native mammal fauna during this period, including fully arboreal species that should be largely unaffected by fox predation – such as the nationally Vulnerable Greater Glider (Petauroides volans) and Common Ringtail Possum (Pseudocheirus peregrinus). We used path analysis to explore potential causes of these unexpected declines. We found no compelling evidence to support hypotheses that competition with increasing native species, native predator release, or increases in native herbivores underpinned mammal declines. Beyond the path analysis, data from other studies completed both inside Booderee National Park and outside (where intensive fox baiting does not occur yet depleted fauna species remain), allowed us to rule out several drivers of change. The temporal declines we documented for arboreal marsupials were not anticipated nor explained by any clear mechanism. We propose the use of experimentally-guided reintroductions and translocations to: (1) restore empty niches such as the currently vacant apex mammal predator niche, (2) reconstruct the now depleted arboreal marsupial guild, and (3) further test key hypotheses associated with mammal decline. We also suggest that given the potential for perverse outcomes following large-scale management interventions (even those where there is high confidence of success), wildlife managers should consider maintaining reference areas (where there is no management intervention). Finally, as the declines we documented were unexpected and rapid, there is a clear need to develop more sensitive early warning signals to alert conservation managers to impending problems, allowing them to alter management regimes before major declines occur. © 2018 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton is provided in this record**
- Authors: Lindenmayer, David , Wood, Jeff , MacGregor, Christopher , Foster, Claire , Barton, Philip
- Date: 2018
- Type: Text , Journal article
- Relation: Biological Conservation Vol. 221, no. (2018), p. 279-292
- Full Text:
- Reviewed:
- Description: The conventional approach to conserving threatened biota is to identify drivers of decline, instigate actions to mitigate threatening processes, and monitor interventions to test their effectiveness and ensure target species recover. In Australia, predation by introduced predators is a threatening process for many native mammals. Here we report the results of a 15 year monitoring study in an iconic Australian reserve, Booderee National Park, where exotic Red Fox (Vulpes vulpes) populations have been controlled through an intensive poison baiting program since 2003. Unexpectedly, we documented the collapse of native mammal fauna during this period, including fully arboreal species that should be largely unaffected by fox predation – such as the nationally Vulnerable Greater Glider (Petauroides volans) and Common Ringtail Possum (Pseudocheirus peregrinus). We used path analysis to explore potential causes of these unexpected declines. We found no compelling evidence to support hypotheses that competition with increasing native species, native predator release, or increases in native herbivores underpinned mammal declines. Beyond the path analysis, data from other studies completed both inside Booderee National Park and outside (where intensive fox baiting does not occur yet depleted fauna species remain), allowed us to rule out several drivers of change. The temporal declines we documented for arboreal marsupials were not anticipated nor explained by any clear mechanism. We propose the use of experimentally-guided reintroductions and translocations to: (1) restore empty niches such as the currently vacant apex mammal predator niche, (2) reconstruct the now depleted arboreal marsupial guild, and (3) further test key hypotheses associated with mammal decline. We also suggest that given the potential for perverse outcomes following large-scale management interventions (even those where there is high confidence of success), wildlife managers should consider maintaining reference areas (where there is no management intervention). Finally, as the declines we documented were unexpected and rapid, there is a clear need to develop more sensitive early warning signals to alert conservation managers to impending problems, allowing them to alter management regimes before major declines occur. © 2018 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton is provided in this record**
Molecular docking interaction of mycobacterium tuberculosis lipb enzyme with isoniazid, pyrazinamide and a structurally altered drug 2, 6 dimethoxyisonicotinohydrazide
- Authors: Namasivayam, Muthuraman
- Date: 2015
- Type: Text , Journal article
- Relation: Computational biology and bioinformatics (Print) Vol. 3, no. 4 (2015), p. 45
- Full Text:
- Reviewed:
- Description: Tuberculosis is an infectious airborne disease caused by a bacterial infection that affects the lungs and other parts of the body. Vaccination against tuberculosis is available but proved to be unsuccessful against emerging multi drug and extensive drug resistant bacterial strains. This in turn raises the pressure to speed up the research on developing new and more efficient anti-tuberculosis drugs. Lipoate biosynthesis protein B (LipB) is found to play vital role in the lipoylation process in Mycobacterium tuberculosis and thus making it a very promising drug target. The existing first line drugs such as Isoniazid, Pyrazinamide and Rifampicin etc shows only profound binding affinity with this target protein. Therefore, new or modified drugs with better docking approach that exhibit a closer and stronger binding affinity is essential. This current study opens up a novel approach towards anti-tuberculosis agents by determining drugs that share similar structures with some of the best available first line drug and also happen to possess better binding affinity. In this article, a computational method by which, pristine as well certain first line and structurally modified drugs were docked with the LipB protein target; where, structurally modified 2, 6 Dimethoxyisonicotinohydrazide show superior target docking.
- Authors: Namasivayam, Muthuraman
- Date: 2015
- Type: Text , Journal article
- Relation: Computational biology and bioinformatics (Print) Vol. 3, no. 4 (2015), p. 45
- Full Text:
- Reviewed:
- Description: Tuberculosis is an infectious airborne disease caused by a bacterial infection that affects the lungs and other parts of the body. Vaccination against tuberculosis is available but proved to be unsuccessful against emerging multi drug and extensive drug resistant bacterial strains. This in turn raises the pressure to speed up the research on developing new and more efficient anti-tuberculosis drugs. Lipoate biosynthesis protein B (LipB) is found to play vital role in the lipoylation process in Mycobacterium tuberculosis and thus making it a very promising drug target. The existing first line drugs such as Isoniazid, Pyrazinamide and Rifampicin etc shows only profound binding affinity with this target protein. Therefore, new or modified drugs with better docking approach that exhibit a closer and stronger binding affinity is essential. This current study opens up a novel approach towards anti-tuberculosis agents by determining drugs that share similar structures with some of the best available first line drug and also happen to possess better binding affinity. In this article, a computational method by which, pristine as well certain first line and structurally modified drugs were docked with the LipB protein target; where, structurally modified 2, 6 Dimethoxyisonicotinohydrazide show superior target docking.
Anti-vaccination and pro-CAM attitudes both reflect magical beliefs about health
- Bryden, Gabrielle, Browne, Matthew, Rockloff, Matthew, Unsworth, Carolyn
- Authors: Bryden, Gabrielle , Browne, Matthew , Rockloff, Matthew , Unsworth, Carolyn
- Date: 2018
- Type: Text , Journal article
- Relation: Vaccine Vol. 36, no. 9 (2018), p. 1227-1234
- Full Text: false
- Reviewed:
- Description: We examined the relationship between complementary and alternative medicine (CAM) use and vaccination scepticism; and specifically whether a person's more general health-related worldview might explain this relationship. A cross-sectional online survey of adult Australians (N = 2697) included demographic, CAM, and vaccination measures, as well as the holistic and magical health belief scales (HHB, MHB). HHB emphasises links between mind and body health, and the impact of general ‘wellness’ on specific ailments or resistance to disease, whilst MHB specifically taps ontological confusions and cognitive errors about health. CAM and anti-vaccination were found to be linked primarily at the attitudinal level (r = −0.437). We did not find evidence that this was due to CAM practitioners influencing their clients. Applying a path-analytic approach, we found that individuals’ health worldview (HHB and MHB) accounted for a significant proportion (43.1%) of the covariance between CAM and vaccination attitudes. MHB was by far the strongest predictor of both CAM and vaccination attitudes in regressions including demographic predictors. We conclude that vaccination scepticism reflects part of a broader health worldview that discounts scientific knowledge in favour of magical or superstitious thinking. Therefore, persuasive messages reflecting this worldview may be more effective than fact-based campaigns in influencing vaccine sceptics. © 2017 Elsevier Ltd
Reptiles and frogs use most land cover types as habitat in a fine-grained agricultural landscape
- Pulsford, Stephanie, Barton, Philip, Driscoll, Don, Kay, Geoffrey, Lindenmayer, David
- Authors: Pulsford, Stephanie , Barton, Philip , Driscoll, Don , Kay, Geoffrey , Lindenmayer, David
- Date: 2018
- Type: Text , Journal article
- Relation: Austral Ecology Vol. 43, no. 5 (2018), p. 502-513
- Full Text: false
- Reviewed:
- Description: Agricultural landscapes comprise much of the earth's terrestrial surface. However, knowledge about how animals use and move through these landscapes is limited, especially for small and cryptic taxa, such as reptiles and amphibians. We aimed to understand the influence of land use on reptile and frog movement in a fine-grained grazing landscape. We surveyed reptiles and frogs using pitfall and funnel traps in transects located in five land use types: 1) woodland remnants, 2) grazed pastures, 3) coarse woody debris added to grazed pastures, 4) fences in grazed pastures and 5) linear plantings within grazed pastures. We found that the different land cover types influenced the types and distances moved by different species and groups of species. Reptiles moved both within, and out of, grazed paddocks more than they did in woodland remnants. In contrast, frogs exhibited varying movement behaviours. The smooth toadlet (Uperoleia laevigata) moved more often and longer distances within remnants than within paddocks. The spotted marsh frog (Limnodynastes tasmaniensis) moved out of grazed pastures more than out of pastures with coarse woody debris added or fences and were never recaptured in plantings. We found that most recaptured reptiles and frogs (76.3%) did not move between trapping arrays, which added to evidence that they perceived most of the land cover types as habitat. We suggest that even simple fences may provide conduits for movement in the agricultural landscape for frogs. Otherwise, most reptile and frog species used all land cover types as habitat, though of varying quality. Reptiles appeared to perceive the woodland remnants as the highest quality habitat. This landscape is fine-grained which may facilitate movement and persistence due to high heterogeneity in vegetation cover over short distances. Therefore, intensification and increasing the size of human land use may have negative impacts on these taxa. © 2018 Ecological Society of Australia
Risky behaviors and associated factors among the elderly in rural Vietnam
- Le Mai, Dinh, Nguyen, Huy, Thanh, Nguyen, Staar, Henning
- Authors: Le Mai, Dinh , Nguyen, Huy , Thanh, Nguyen , Staar, Henning
- Date: 2017
- Type: Text , Journal article
- Relation: Journal of Aging Science Vol. 5, no. 2 (2017), p.
- Full Text:
- Reviewed:
- Description: Background: The number of older people in Vietnam has increased substantially for recent years and leading to more aging health problems. The purpose of this study was to assess risky behaviors and their associated factors among the elderly in rural Vietnam.
- Authors: Le Mai, Dinh , Nguyen, Huy , Thanh, Nguyen , Staar, Henning
- Date: 2017
- Type: Text , Journal article
- Relation: Journal of Aging Science Vol. 5, no. 2 (2017), p.
- Full Text:
- Reviewed:
- Description: Background: The number of older people in Vietnam has increased substantially for recent years and leading to more aging health problems. The purpose of this study was to assess risky behaviors and their associated factors among the elderly in rural Vietnam.
- Evans, Maldwyn, Cunningham, Saul, Gibb, Heloise, Manning, Adrian, Barton, Philip
- Authors: Evans, Maldwyn , Cunningham, Saul , Gibb, Heloise , Manning, Adrian , Barton, Philip
- Date: 2019
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 104, no. (2019), p. 209-218
- Full Text: false
- Reviewed:
- Description: Ecosystem restoration can play a vital role in conserving biodiversity, but its effectiveness can be difficult to assess for hyperdiverse biota such as insects. Species traits of insects can be used to understand their functional responses to restoration, but their use often requires considerable effort, and few studies have examined what additional insight can be gained from this approach. We used a spatially and temporally controlled restoration experiment to examine beetle species, grouped by flight ability, family membership and feeding guild, as indicators of ecosystem functional change. We tested for the effects of reduced vertebrate grazing on beetle assemblages sampled from two different microhabitats (next to log and in open ground)one year prior and two years after a vertebrate grazing treatment was applied. We compared the responses of the different beetle functional groupings, and then related these to the effort involved in employing these indicators. We found that beetle species traits gave several functional insights into their responses to reduced grazing, including responses to changes in vegetation structure and biomass. Species richness indicators and abundance indicators of beetle functional groups showed similar responses in many cases, whereas biomass indicators gave additional insights related to the extra biomass of vegetation and detritus resulting from the reduction in grazing. We found that most results were revealed by using family groups as indicators for functional change. This is because the traits that often define beetle families, such as size, flight ability and feeding guilds each have distinctive functional roles, allowing a link from family to function, and supporting the idea that phylogeny is often a useful shortcut to species ecology. We conclude that in our study system, the least-cost approach to identifying functional responses of beetles to reduced vertebrate grazing, and possibly other restoration actions, is to use abundance indicators of the most common family groups. © 2019 Elsevier Ltd
Towards quantifying carrion biomass in ecosystems
- Barton, Philip, Evans, Maldwyn, Foster, Claire, Pechal, Jennifer, Bump, Joseph
- Authors: Barton, Philip , Evans, Maldwyn , Foster, Claire , Pechal, Jennifer , Bump, Joseph
- Date: 2019
- Type: Text , Journal article , Review
- Relation: Trends in Ecology and Evolution Vol. 34, no. 10 (2019), p. 950-961
- Full Text:
- Reviewed:
- Description: The decomposition of animal biomass (carrion) contributes to the recycling of energy and nutrients through ecosystems. Whereas the role of plant decomposition in ecosystems is broadly recognised, the significance of carrion to ecosystem functioning remains poorly understood. Quantitative data on carrion biomass are lacking and there is no clear pathway towards improved knowledge in this area. Here, we present a framework to show how quantities derived from individual carcasses can be scaled up using population metrics, allowing for comparisons among ecosystems and other forms of biomass. Our framework facilitates the generation of new data that is critical to building a quantitative understanding of the contribution of carrion to trophic processes and ecosystem stocks and flows. © 2019 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
- Authors: Barton, Philip , Evans, Maldwyn , Foster, Claire , Pechal, Jennifer , Bump, Joseph
- Date: 2019
- Type: Text , Journal article , Review
- Relation: Trends in Ecology and Evolution Vol. 34, no. 10 (2019), p. 950-961
- Full Text:
- Reviewed:
- Description: The decomposition of animal biomass (carrion) contributes to the recycling of energy and nutrients through ecosystems. Whereas the role of plant decomposition in ecosystems is broadly recognised, the significance of carrion to ecosystem functioning remains poorly understood. Quantitative data on carrion biomass are lacking and there is no clear pathway towards improved knowledge in this area. Here, we present a framework to show how quantities derived from individual carcasses can be scaled up using population metrics, allowing for comparisons among ecosystems and other forms of biomass. Our framework facilitates the generation of new data that is critical to building a quantitative understanding of the contribution of carrion to trophic processes and ecosystem stocks and flows. © 2019 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
Higher-taxon and functional group responses of ant and bird assemblages to livestock grazing : a test of an explicit surrogate concept
- Barton, Philip, Evans, Maldwyn, Sato, Chloe, O'Loughlin, Luke, Foster, Claire
- Authors: Barton, Philip , Evans, Maldwyn , Sato, Chloe , O'Loughlin, Luke , Foster, Claire
- Date: 2019
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 96, no. (2019), p. 458-465
- Full Text:
- Reviewed:
- Description: Biodiversity monitoring programs are routinely established to quantify changes in biotic communities in response to land management. Surrogacy is implicitly used in many such monitoring programs whereby the measurement of a component of biodiversity is used to infer responses of broader biodiversity. Yet rarely is this surrogacy validated by demonstrating that measured variables and the target variable of interest have matching responses to management treatments. Here we examined the responses of higher-taxon and functional groupings of ants and birds (our surrogate variables) two years after the implementation of experimental livestock grazing treatments, and compared these with the responses of total ant and bird species richness (our target variables) to the same treatments. We found significant and strong correlations between surrogate and target variables, but this did not predict corresponding similar response to treatments. For ants, we found that the genus Monomorium had a negative response to the grazing exclusion treatment, but there was no matching response of species richness, and so no surrogacy was identified. For birds, total species richness had a weak positive response to spring/summer grazing exclusion, and the abundance of honeyeaters (Meliphagidae) showed a similar positive response, suggesting surrogacy. Our study highlights that correlations among variables do not necessarily lead to surrogacy, and indeed that different sub-components of biotic assemblages can respond in ways that contrast with overall species richness. Careful assessment of the matched responses of surrogate and target variables to management can provide a simple and robust way to critically assess biodiversity surrogacy. © 2018 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
- Authors: Barton, Philip , Evans, Maldwyn , Sato, Chloe , O'Loughlin, Luke , Foster, Claire
- Date: 2019
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 96, no. (2019), p. 458-465
- Full Text:
- Reviewed:
- Description: Biodiversity monitoring programs are routinely established to quantify changes in biotic communities in response to land management. Surrogacy is implicitly used in many such monitoring programs whereby the measurement of a component of biodiversity is used to infer responses of broader biodiversity. Yet rarely is this surrogacy validated by demonstrating that measured variables and the target variable of interest have matching responses to management treatments. Here we examined the responses of higher-taxon and functional groupings of ants and birds (our surrogate variables) two years after the implementation of experimental livestock grazing treatments, and compared these with the responses of total ant and bird species richness (our target variables) to the same treatments. We found significant and strong correlations between surrogate and target variables, but this did not predict corresponding similar response to treatments. For ants, we found that the genus Monomorium had a negative response to the grazing exclusion treatment, but there was no matching response of species richness, and so no surrogacy was identified. For birds, total species richness had a weak positive response to spring/summer grazing exclusion, and the abundance of honeyeaters (Meliphagidae) showed a similar positive response, suggesting surrogacy. Our study highlights that correlations among variables do not necessarily lead to surrogacy, and indeed that different sub-components of biotic assemblages can respond in ways that contrast with overall species richness. Careful assessment of the matched responses of surrogate and target variables to management can provide a simple and robust way to critically assess biodiversity surrogacy. © 2018 Elsevier Ltd. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
Integrating theory into disturbance interaction experiments to better inform ecosystem management
- Foster, Claire, Sato, Chloe, Lindenmayer, David, Barton, Philip
- Authors: Foster, Claire , Sato, Chloe , Lindenmayer, David , Barton, Philip
- Date: 2016
- Type: Text , Journal article
- Relation: Global Change Biology Vol. 22, no. 4 (2016), p. 1325-1335
- Full Text:
- Reviewed:
- Description: Managing multiple, interacting disturbances is a key challenge to biodiversity conservation, and one that will only increase as global change drivers continue to alter disturbance regimes. Theoretical studies have highlighted the importance of a mechanistic understanding of stressor interactions for improving the prediction and management of interactive effects. However, many conservation studies are not designed or interpreted in the context of theory and instead focus on case-specific management questions. This is a problem as it means that few studies test the relationships highlighted in theoretical models as being important for ecological management. We explore the extent of this problem among studies of interacting disturbances by reviewing recent experimental studies of the interaction between fire and grazing in terrestrial ecosystems. Interactions between fire and grazing can occur via a number of pathways; one disturbance can modify the other's likelihood, intensity or spatial distribution, or one disturbance can alter the other's impacts on individual organisms. The strength of such interactions will vary depending on disturbance attributes (e.g. size or intensity), and this variation is likely to be nonlinear. We show that few experiments testing fire-grazing interactions are able to identify the mechanistic pathway driving an observed interaction, and most are unable to detect nonlinear effects. We demonstrate how these limitations compromise the ability of experimental studies to effectively inform ecological management. We propose a series of adjustments to the design of disturbance interaction experiments that would enable tests of key theoretical pathways and provide the deeper ecological understanding necessary for effective management. Such considerations are relevant to studies of a broad range of ecological interactions and are critical to informing the management of disturbance regimes in the context of accelerating global change. © 2016 John Wiley & Sons Ltd.
- Authors: Foster, Claire , Sato, Chloe , Lindenmayer, David , Barton, Philip
- Date: 2016
- Type: Text , Journal article
- Relation: Global Change Biology Vol. 22, no. 4 (2016), p. 1325-1335
- Full Text:
- Reviewed:
- Description: Managing multiple, interacting disturbances is a key challenge to biodiversity conservation, and one that will only increase as global change drivers continue to alter disturbance regimes. Theoretical studies have highlighted the importance of a mechanistic understanding of stressor interactions for improving the prediction and management of interactive effects. However, many conservation studies are not designed or interpreted in the context of theory and instead focus on case-specific management questions. This is a problem as it means that few studies test the relationships highlighted in theoretical models as being important for ecological management. We explore the extent of this problem among studies of interacting disturbances by reviewing recent experimental studies of the interaction between fire and grazing in terrestrial ecosystems. Interactions between fire and grazing can occur via a number of pathways; one disturbance can modify the other's likelihood, intensity or spatial distribution, or one disturbance can alter the other's impacts on individual organisms. The strength of such interactions will vary depending on disturbance attributes (e.g. size or intensity), and this variation is likely to be nonlinear. We show that few experiments testing fire-grazing interactions are able to identify the mechanistic pathway driving an observed interaction, and most are unable to detect nonlinear effects. We demonstrate how these limitations compromise the ability of experimental studies to effectively inform ecological management. We propose a series of adjustments to the design of disturbance interaction experiments that would enable tests of key theoretical pathways and provide the deeper ecological understanding necessary for effective management. Such considerations are relevant to studies of a broad range of ecological interactions and are critical to informing the management of disturbance regimes in the context of accelerating global change. © 2016 John Wiley & Sons Ltd.
Incorporating regional-scale ecological knowledge to improve the effectiveness of large-scale conservation programmes
- Kay, G., Barton, Philip, Driscoll, D., Cunningham, S., Blanchard, W.
- Authors: Kay, G. , Barton, Philip , Driscoll, D. , Cunningham, S. , Blanchard, W.
- Date: 2016
- Type: Text , Journal article
- Relation: Animal Conservation Vol. 19, no. 6 (2016), p. 515-525
- Full Text:
- Reviewed:
- Description: Land-stewardship programmes are a major focus of investment by governments for conserving biodiversity in agricultural landscapes. These programmes are generally large-scale (e.g. >1000 km) spanning multiple biogeographic regions but developed using spatially limited (e.g. landscape-scale; <100 km) ecological data interpolated across broad areas for one, or a few, well-studied taxonomic groups. Information about how less-studied taxa respond to regional differences in management and environmental effects has potential to further inform land-stewardship conservation programmes, but suitable data sets are rarely available. In this study, we sought to enhance planning of large-scale conservation programmes by quantifying relationships between reptile assemblages and key environmental attributes at regional scales within a large-scale (>172 000 km2) Australian land-stewardship programme. Using 234 remnant woodland monitoring sites spanning four distinct biogeographic regions, we asked: Do reptile assemblages show different environmental associations across biogeographically distinct regions? We found that environmental features important to reptile diversity differed over each region. Abundance and rare species richness of reptiles responded at regional-scales to elevation, native groundcover and aspect. We identified four implications from our study: (1) large-scale conservation schemes can achieve better outcomes for reptiles using regional-scale knowledge of environmental associations; (2) regional-scale knowledge is particularly valuable for conservation of rare reptile taxa; (3) consideration of abiotic environmental features which cannot be directly managed (e.g. aspect, elevation) is important; (4) programmes can be tailored to better support reptile groups at higher conservation risk. Our study shows that reptile-environment associations differ among biogeographic regions, and this presents opportunity for tailoring stronger policy and management strategies for conserving large-scale agricultural landscapes globally. © 2016 The Zoological Society of London. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
- Authors: Kay, G. , Barton, Philip , Driscoll, D. , Cunningham, S. , Blanchard, W.
- Date: 2016
- Type: Text , Journal article
- Relation: Animal Conservation Vol. 19, no. 6 (2016), p. 515-525
- Full Text:
- Reviewed:
- Description: Land-stewardship programmes are a major focus of investment by governments for conserving biodiversity in agricultural landscapes. These programmes are generally large-scale (e.g. >1000 km) spanning multiple biogeographic regions but developed using spatially limited (e.g. landscape-scale; <100 km) ecological data interpolated across broad areas for one, or a few, well-studied taxonomic groups. Information about how less-studied taxa respond to regional differences in management and environmental effects has potential to further inform land-stewardship conservation programmes, but suitable data sets are rarely available. In this study, we sought to enhance planning of large-scale conservation programmes by quantifying relationships between reptile assemblages and key environmental attributes at regional scales within a large-scale (>172 000 km2) Australian land-stewardship programme. Using 234 remnant woodland monitoring sites spanning four distinct biogeographic regions, we asked: Do reptile assemblages show different environmental associations across biogeographically distinct regions? We found that environmental features important to reptile diversity differed over each region. Abundance and rare species richness of reptiles responded at regional-scales to elevation, native groundcover and aspect. We identified four implications from our study: (1) large-scale conservation schemes can achieve better outcomes for reptiles using regional-scale knowledge of environmental associations; (2) regional-scale knowledge is particularly valuable for conservation of rare reptile taxa; (3) consideration of abiotic environmental features which cannot be directly managed (e.g. aspect, elevation) is important; (4) programmes can be tailored to better support reptile groups at higher conservation risk. Our study shows that reptile-environment associations differ among biogeographic regions, and this presents opportunity for tailoring stronger policy and management strategies for conserving large-scale agricultural landscapes globally. © 2016 The Zoological Society of London. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
Herbivory and fire interact to affect forest understory habitat, but not its use by small vertebrates
- Foster, Claire, Barton, Philip, Sato, C. F., Wood, J. T., Macgregor, C. I., Lindenmayer, David
- Authors: Foster, Claire , Barton, Philip , Sato, C. F. , Wood, J. T. , Macgregor, C. I. , Lindenmayer, David
- Date: 2016
- Type: Text , Journal article
- Relation: Animal Conservation Vol. 19, no. 1 (2016), p. 15-25
- Full Text:
- Reviewed:
- Description: Herbivory and fire are two disturbances that often co-occur, but studies of their interactive effects are rare outside of grassland ecosystems. We experimentally tested the interactive effects of prescribed fire and macropod herbivory on forest understory vegetation and its vertebrate fauna. Fire and herbivory interacted synergistically to affect forest understory vegetation, with palatable plants showing poor post-fire recovery in unfenced sites compared with herbivore exclusion sites. Despite this strong interactive effect on vegetation, small vertebrates responded to the individual, and not the interactive effects of disturbance. The native insectivorous mammal Antechinus stuartii was more frequently encountered on large herbivore exclusion sites, as was the introduced European rabbit. In contrast, the small skink Lampropholis delicata was more common on sites with high densities of large herbivores. Skinks, snakes and European rabbits were also more active on burnt than unburnt sites. Our results suggest that it may be necessary to manage the macropod herbivore population after fire to prevent the decline of palatable plants, and maintain the dense habitat required by some small mammals. However, as the invasive rabbit was most active in macropod-free sites after fire, any management must include control of both types of herbivores. A mix of understory densities may also need to be maintained to ensure the persistence of species preferring more open habitats. Our study demonstrates that interactive effects of disturbance on vegetation communities may not lead to predictable effects on animals, and highlights the importance of considering both multiple stressors, and multiple species, in the management of disturbance regimes. © 2016 The Zoological Society of London.
- Authors: Foster, Claire , Barton, Philip , Sato, C. F. , Wood, J. T. , Macgregor, C. I. , Lindenmayer, David
- Date: 2016
- Type: Text , Journal article
- Relation: Animal Conservation Vol. 19, no. 1 (2016), p. 15-25
- Full Text:
- Reviewed:
- Description: Herbivory and fire are two disturbances that often co-occur, but studies of their interactive effects are rare outside of grassland ecosystems. We experimentally tested the interactive effects of prescribed fire and macropod herbivory on forest understory vegetation and its vertebrate fauna. Fire and herbivory interacted synergistically to affect forest understory vegetation, with palatable plants showing poor post-fire recovery in unfenced sites compared with herbivore exclusion sites. Despite this strong interactive effect on vegetation, small vertebrates responded to the individual, and not the interactive effects of disturbance. The native insectivorous mammal Antechinus stuartii was more frequently encountered on large herbivore exclusion sites, as was the introduced European rabbit. In contrast, the small skink Lampropholis delicata was more common on sites with high densities of large herbivores. Skinks, snakes and European rabbits were also more active on burnt than unburnt sites. Our results suggest that it may be necessary to manage the macropod herbivore population after fire to prevent the decline of palatable plants, and maintain the dense habitat required by some small mammals. However, as the invasive rabbit was most active in macropod-free sites after fire, any management must include control of both types of herbivores. A mix of understory densities may also need to be maintained to ensure the persistence of species preferring more open habitats. Our study demonstrates that interactive effects of disturbance on vegetation communities may not lead to predictable effects on animals, and highlights the importance of considering both multiple stressors, and multiple species, in the management of disturbance regimes. © 2016 The Zoological Society of London.
Do temporal changes in vegetation structure additional to time since fire predict changes in bird occurrence?
- Lindenmayer, David, Candy, Steven, MacGregor, Christopher, Banks, Sam, Barton, Philip
- Authors: Lindenmayer, David , Candy, Steven , MacGregor, Christopher , Banks, Sam , Barton, Philip
- Date: 2016
- Type: Text , Journal article
- Relation: Ecological Applications Vol. 26, no. 7 (2016), p. 2267-2279
- Full Text:
- Reviewed:
- Description: Fire is a major ecological process in ecosystems globally. Its impacts on fauna can be both direct (e.g., mortality) and indirect (e.g., altered habitat), resulting in population recovery being driven by several possible mechanisms. Separating direct from indirect impacts of fire on faunal population recovery can be valuable in guiding management of biodiversity in fire-prone environments. However, resolving the influence of direct and indirect processes remains a key challenge because many processes affecting fauna can change concomitantly with time since fire. We explore the mechanisms influencing bird response to fire by posing the question, can temporal changes in vegetation structure predict changes in bird occurrence on sites, and can these be separated from other temporal changes using the surrogate of time since fire? We conducted a 12-yr study of bird and vegetation responses to fire at 124 sites across six vegetation classes in Booderee National Park, Australia. Approximately half of these sites, established in 2002, were burned by a large (>3000 ha) wildfire in 2003. To disentangle collinear effects of temporal changes in vegetation and direct demographic effects on population recovery that are subsumed by time since fire, we incorporated both longitudinal and cross-sectional vegetation effects in addition to time since fire within logistic structural equation models. We identified temporal changes in vegetation structure and richness of plant and bird species that characterized burned and unburned sites in all vegetation classes. For nine bird species, a significant component of the year trend was driven by temporal trends in one of three vegetation variables (number of understory or midstory plant species, or midstory cover). By contrast, we could not separate temporal effects between time since fire and vegetation attributes for bird species richness, reporting rate, and the occurrence of 11 other bird species. Our findings help identify species for which indirect effects of vegetation dominate recovery and thus may benefit from vegetation management where conservation actions are required and, conversely, those species for which direct effects of time since fire drive recovery, where simply leaving a system to recover following the last disturbance will be sufficient. © 2016 by the Ecological Society of America.
- Authors: Lindenmayer, David , Candy, Steven , MacGregor, Christopher , Banks, Sam , Barton, Philip
- Date: 2016
- Type: Text , Journal article
- Relation: Ecological Applications Vol. 26, no. 7 (2016), p. 2267-2279
- Full Text:
- Reviewed:
- Description: Fire is a major ecological process in ecosystems globally. Its impacts on fauna can be both direct (e.g., mortality) and indirect (e.g., altered habitat), resulting in population recovery being driven by several possible mechanisms. Separating direct from indirect impacts of fire on faunal population recovery can be valuable in guiding management of biodiversity in fire-prone environments. However, resolving the influence of direct and indirect processes remains a key challenge because many processes affecting fauna can change concomitantly with time since fire. We explore the mechanisms influencing bird response to fire by posing the question, can temporal changes in vegetation structure predict changes in bird occurrence on sites, and can these be separated from other temporal changes using the surrogate of time since fire? We conducted a 12-yr study of bird and vegetation responses to fire at 124 sites across six vegetation classes in Booderee National Park, Australia. Approximately half of these sites, established in 2002, were burned by a large (>3000 ha) wildfire in 2003. To disentangle collinear effects of temporal changes in vegetation and direct demographic effects on population recovery that are subsumed by time since fire, we incorporated both longitudinal and cross-sectional vegetation effects in addition to time since fire within logistic structural equation models. We identified temporal changes in vegetation structure and richness of plant and bird species that characterized burned and unburned sites in all vegetation classes. For nine bird species, a significant component of the year trend was driven by temporal trends in one of three vegetation variables (number of understory or midstory plant species, or midstory cover). By contrast, we could not separate temporal effects between time since fire and vegetation attributes for bird species richness, reporting rate, and the occurrence of 11 other bird species. Our findings help identify species for which indirect effects of vegetation dominate recovery and thus may benefit from vegetation management where conservation actions are required and, conversely, those species for which direct effects of time since fire drive recovery, where simply leaving a system to recover following the last disturbance will be sufficient. © 2016 by the Ecological Society of America.
Temporal trends in mammal responses to fire reveals the complex effects of fire regime attributes
- Lindenmayer, David, Blanchard, Wade, MacGregor, Christopher, Barton, Philip, Banks, Sam
- Authors: Lindenmayer, David , Blanchard, Wade , MacGregor, Christopher , Barton, Philip , Banks, Sam
- Date: 2016
- Type: Text , Journal article
- Relation: Ecological Applications Vol. 26, no. 2 (2016), p. 557-573
- Full Text:
- Reviewed:
- Description: Fire is a major ecological process in many ecosystems worldwide. We sought to identify which attributes of fire regimes affect temporal change in the presence and abundance of Australian native mammals. Our detailed study was underpinned by time series data on 11 mammal species at 97 long-term sites in southeastern Australia between 2003 and 2013. We explored how temporal aspects of fire regimes influenced the presence and conditional abundance of species. The key fire regime components examined were: (1) severity of a major fire in 2003, (2) interval between the last major fire (2003) and the fire prior to that, and (3) number of past fires. Our long-term data set enabled quantification of the interactions between survey year and each fire regime variable: an ecological relationship missing from temporally restricted studies. We found no evidence of any appreciable departures from the assumption of independence of the sites. Multiple aspects of fire regimes influenced temporal variation in the presence and abundance of mammals. The best models indicated that six of the 11 species responded to two or more fire regime variables, with two species influenced by all three fire regime attributes. Almost all species responded to time since fire, either as an interaction with survey year or as a main effect. Fire severity or its interaction with survey year was important for most terrestrial rodents. The number of fires at a site was significant for terrestrial rodents and several other species. Our findings contain evidence of the effects on native mammals of heterogeneity in fire regimes. Temporal response patterns of mammal species were influenced by multiple fire regime attributes, often in conjunction with survey year. This underscores the critical importance of long-term studies of biota that are coupled with data sets characterized by carefully documented fire history, severity, and frequency. Long-term studies are essential to predict animal responses to fires and guide management of when and where (prescribed) fire or, conversely, long-unburned vegetation is needed. The complexity of observed responses highlights the need for large reserves in which patterns of heterogeneity in fire regimes can be sustained in space and over time. © 2015 by the Ecological Society of America. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
- Authors: Lindenmayer, David , Blanchard, Wade , MacGregor, Christopher , Barton, Philip , Banks, Sam
- Date: 2016
- Type: Text , Journal article
- Relation: Ecological Applications Vol. 26, no. 2 (2016), p. 557-573
- Full Text:
- Reviewed:
- Description: Fire is a major ecological process in many ecosystems worldwide. We sought to identify which attributes of fire regimes affect temporal change in the presence and abundance of Australian native mammals. Our detailed study was underpinned by time series data on 11 mammal species at 97 long-term sites in southeastern Australia between 2003 and 2013. We explored how temporal aspects of fire regimes influenced the presence and conditional abundance of species. The key fire regime components examined were: (1) severity of a major fire in 2003, (2) interval between the last major fire (2003) and the fire prior to that, and (3) number of past fires. Our long-term data set enabled quantification of the interactions between survey year and each fire regime variable: an ecological relationship missing from temporally restricted studies. We found no evidence of any appreciable departures from the assumption of independence of the sites. Multiple aspects of fire regimes influenced temporal variation in the presence and abundance of mammals. The best models indicated that six of the 11 species responded to two or more fire regime variables, with two species influenced by all three fire regime attributes. Almost all species responded to time since fire, either as an interaction with survey year or as a main effect. Fire severity or its interaction with survey year was important for most terrestrial rodents. The number of fires at a site was significant for terrestrial rodents and several other species. Our findings contain evidence of the effects on native mammals of heterogeneity in fire regimes. Temporal response patterns of mammal species were influenced by multiple fire regime attributes, often in conjunction with survey year. This underscores the critical importance of long-term studies of biota that are coupled with data sets characterized by carefully documented fire history, severity, and frequency. Long-term studies are essential to predict animal responses to fires and guide management of when and where (prescribed) fire or, conversely, long-unburned vegetation is needed. The complexity of observed responses highlights the need for large reserves in which patterns of heterogeneity in fire regimes can be sustained in space and over time. © 2015 by the Ecological Society of America. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton” is provided in this record**
Two roles for ecological surrogacy : indicator surrogates and management surrogates
- Hunter, Malcolm, Westgate, Martin, Barton, Philip, Calhoun, Aram, Pierson, Jennifer
- Authors: Hunter, Malcolm , Westgate, Martin , Barton, Philip , Calhoun, Aram , Pierson, Jennifer
- Date: 2016
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 63, no. (2016), p. 121-125
- Full Text:
- Reviewed:
- Description: Ecological surrogacy - here defined as using a process or element (e.g., species, ecosystem, or abiotic factor) to represent another aspect of an ecological system - is a widely used concept, but many applications of the surrogate concept have been controversial. We argue that some of this controversy reflects differences among users with different goals, a distinction that can be crystalized by recognizing two basic types of surrogate. First, many ecologists and natural resource managers measure "indicator surrogates" to provide information about ecological systems. Second, and often overlooked, are "management surrogates" (e.g., umbrella species) that are primarily used to facilitate achieving management goals, especially broad goals such as "maintain biodiversity" or "increase ecosystem resilience." We propose that distinguishing these two overarching roles for surrogacy may facilitate better communication about project goals. This is critical when evaluating the usefulness of different surrogates, especially where a potential surrogate might be useful in one role but not another. Our classification for ecological surrogacy applies to species, ecosystems, ecological processes, abiotic factors, and genetics, and thus can provide coherence across a broad range of uses. © 2015 Elsevier Ltd. All rights reserved. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton" is provided in this record**
- Authors: Hunter, Malcolm , Westgate, Martin , Barton, Philip , Calhoun, Aram , Pierson, Jennifer
- Date: 2016
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 63, no. (2016), p. 121-125
- Full Text:
- Reviewed:
- Description: Ecological surrogacy - here defined as using a process or element (e.g., species, ecosystem, or abiotic factor) to represent another aspect of an ecological system - is a widely used concept, but many applications of the surrogate concept have been controversial. We argue that some of this controversy reflects differences among users with different goals, a distinction that can be crystalized by recognizing two basic types of surrogate. First, many ecologists and natural resource managers measure "indicator surrogates" to provide information about ecological systems. Second, and often overlooked, are "management surrogates" (e.g., umbrella species) that are primarily used to facilitate achieving management goals, especially broad goals such as "maintain biodiversity" or "increase ecosystem resilience." We propose that distinguishing these two overarching roles for surrogacy may facilitate better communication about project goals. This is critical when evaluating the usefulness of different surrogates, especially where a potential surrogate might be useful in one role but not another. Our classification for ecological surrogacy applies to species, ecosystems, ecological processes, abiotic factors, and genetics, and thus can provide coherence across a broad range of uses. © 2015 Elsevier Ltd. All rights reserved. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Philip Barton" is provided in this record**