- Title
- Spatial modelling of bacterial diversity over the selected regions in Bangladesh by next-generation sequencing : role of water temperature
- Creator
- Akter, Nabila; Wahiduzzaman, Md; Yeasmin, Alea; Islam, Kazi; Luo, Jing-Jia
- Date
- 2020
- Type
- Text; Journal article
- Identifier
- http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/172361
- Identifier
- vital:14470
- Identifier
-
https://doi.org/10.3390/app10072537
- Identifier
- ISBN:2076-3417 (ISSN)
- Abstract
- In this study, a spatial model has been developed to investigate the role of water temperature to the distribution of bacteria over the selected regions in the Bay of Bengal, located in the southern region of Bangladesh using next-generation sequencing. Bacterial concentration, quantitative polymerase chain reactions, and sequencing were performed on water samples and identified Acidobacteria, Actinobacteria, Bacteroidetes, Chlorobi, Chloroflexi, Cyanobacteria, Firmicutes, Nitrospirae, Planctomycetes, Proteobacteria, and Verrucomicrobia. The spatial model tessellated the parts of the Bay of Bengal with hexagons and analyzed the relationship between the distribution of bacteria and water temperature. A geographically weighted regression was used to observe whether water temperature contributed strongly or weakly to the distribution of bacteria. The residuals were examined to assess the model's fitness. The spatial model has the potential to predict the bacterial diversity in the selected regions of Bangladesh. © 2020 by the authors.
- Publisher
- MDPI AG
- Relation
- Applied Sciences (Switzerland) Vol. 10, no. 7 (2020), p.
- Rights
- http://creativecommons.org/licenses/by/4.0/
- Rights
- Copyright © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
- Rights
- Open Access
- Rights
- This metadata is freely available under a CCO license
- Subject
- 0101 Pure Mathematics; Bacterial distribution; Bangladesh; Next generation sequencing; Spatial modelling; Water temperature
- Full Text
- Reviewed
- Hits: 2878
- Visitors: 1721
- Downloads: 188
| Thumbnail | File | Description | Size | Format | |||
|---|---|---|---|---|---|---|---|
| View Details Download | SOURCE1 | Published | 845 KB | Adobe Acrobat PDF | View Details Download |