Animal population decline and recovery after severe fire: Relating ecological and life history traits with expert estimates of population impacts from the Australian 2019-20 megafires
- Ensbey, Michelle, Legge, Sarah, Jolly, Chris, Garnett, Stephen, Gallagher, Rachael, Lintermans, Mark, Nimmo, Dale, Rumpff, Libby, Scheele, Ben, Whiterod, Nick, Woinarski, John, Ahyong, Shane, Blackmore, Caroline, Bower, Deborah, Burbidge, Allan, Burns, Phoebe, Butler, Gavin, Catullo, Renee, Chapple, David, Dickman, Christopher, Doyle, Katie, Ferris, Jason, Fisher, Diana, Geyle, Hayley, Gillespie, Graeme, Greenlees, Matt, Hohnen, Rosemary, Hoskin, Conrad, Kennard, Mark, King, Alison, Kuchinke, Diana, Law, Brad, Lawler, Ivan, Lawler, Susan, Loyn, Richard, Lunney, Daniel, Lyon, Jarod, MacHunter, Josephine, Mahony, Michael, Mahony, Stephen, McCormack, Rob, Melville, Jane, Menkhorst, Peter, Michael, Damian, Mitchell, Nicola, Mulder, Eridani, Newell, David, Pearce, Luke, Raadik, Tarmo, Rowley, Jodi, Sitters, Holly, Southwell, Darren, Spencer, Ricky, West, Matt, Zukowski, Sylvia
- Authors: Ensbey, Michelle , Legge, Sarah , Jolly, Chris , Garnett, Stephen , Gallagher, Rachael , Lintermans, Mark , Nimmo, Dale , Rumpff, Libby , Scheele, Ben , Whiterod, Nick , Woinarski, John , Ahyong, Shane , Blackmore, Caroline , Bower, Deborah , Burbidge, Allan , Burns, Phoebe , Butler, Gavin , Catullo, Renee , Chapple, David , Dickman, Christopher , Doyle, Katie , Ferris, Jason , Fisher, Diana , Geyle, Hayley , Gillespie, Graeme , Greenlees, Matt , Hohnen, Rosemary , Hoskin, Conrad , Kennard, Mark , King, Alison , Kuchinke, Diana , Law, Brad , Lawler, Ivan , Lawler, Susan , Loyn, Richard , Lunney, Daniel , Lyon, Jarod , MacHunter, Josephine , Mahony, Michael , Mahony, Stephen , McCormack, Rob , Melville, Jane , Menkhorst, Peter , Michael, Damian , Mitchell, Nicola , Mulder, Eridani , Newell, David , Pearce, Luke , Raadik, Tarmo , Rowley, Jodi , Sitters, Holly , Southwell, Darren , Spencer, Ricky , West, Matt , Zukowski, Sylvia
- Date: 2023
- Type: Text , Journal article
- Relation: Biological conservation Vol. 283, no. (2023), p. 110021
- Full Text:
- Reviewed:
- Description: Catastrophic megafires can increase extinction risks identifying species priorities for management and policy support is critical for preparing and responding to future fires. However, empirical data on population loss and recovery post-fire, especially megafire, are limited and taxonomically biased. These gaps could be bridged if species' morphological, behavioural, ecological and life history traits indicated their fire responses. Using expert elicitation that estimated population changes following the 2019–20 Australian megafires for 142 terrestrial and aquatic animal species (from every vertebrate class, one invertebrate group), we examined whether expert estimates of fire-related mortality, mortality in the year post-fire, and recovery trajectories over 10 years/three generations post-fire, were related to species traits. Expert estimates for fire-related mortality were lower for species that could potentially flee or shelter from fire, and that associated with fire-prone habitats. Post-fire mortality estimates were linked to diet, diet specialisation, home range size, and susceptibility to introduced herbivores that damage or compete for resources. Longer-term population recovery estimates were linked to diet/habitat specialisation, susceptibility to introduced species species with slower life histories and shorter subadult dispersal distances also had lower recovery estimates. Across animal groups, experts estimated that recovery was poorest for species with pre-fire population decline and more threatened conservation status. Sustained management is likely needed to recover species with habitat and diet specialisations, slower life histories, pre-existing declines and threatened conservation statuses. This study shows that traits could help inform management priorities before and after future megafires, but further empirical data on animal fire response is essential.
- Authors: Ensbey, Michelle , Legge, Sarah , Jolly, Chris , Garnett, Stephen , Gallagher, Rachael , Lintermans, Mark , Nimmo, Dale , Rumpff, Libby , Scheele, Ben , Whiterod, Nick , Woinarski, John , Ahyong, Shane , Blackmore, Caroline , Bower, Deborah , Burbidge, Allan , Burns, Phoebe , Butler, Gavin , Catullo, Renee , Chapple, David , Dickman, Christopher , Doyle, Katie , Ferris, Jason , Fisher, Diana , Geyle, Hayley , Gillespie, Graeme , Greenlees, Matt , Hohnen, Rosemary , Hoskin, Conrad , Kennard, Mark , King, Alison , Kuchinke, Diana , Law, Brad , Lawler, Ivan , Lawler, Susan , Loyn, Richard , Lunney, Daniel , Lyon, Jarod , MacHunter, Josephine , Mahony, Michael , Mahony, Stephen , McCormack, Rob , Melville, Jane , Menkhorst, Peter , Michael, Damian , Mitchell, Nicola , Mulder, Eridani , Newell, David , Pearce, Luke , Raadik, Tarmo , Rowley, Jodi , Sitters, Holly , Southwell, Darren , Spencer, Ricky , West, Matt , Zukowski, Sylvia
- Date: 2023
- Type: Text , Journal article
- Relation: Biological conservation Vol. 283, no. (2023), p. 110021
- Full Text:
- Reviewed:
- Description: Catastrophic megafires can increase extinction risks identifying species priorities for management and policy support is critical for preparing and responding to future fires. However, empirical data on population loss and recovery post-fire, especially megafire, are limited and taxonomically biased. These gaps could be bridged if species' morphological, behavioural, ecological and life history traits indicated their fire responses. Using expert elicitation that estimated population changes following the 2019–20 Australian megafires for 142 terrestrial and aquatic animal species (from every vertebrate class, one invertebrate group), we examined whether expert estimates of fire-related mortality, mortality in the year post-fire, and recovery trajectories over 10 years/three generations post-fire, were related to species traits. Expert estimates for fire-related mortality were lower for species that could potentially flee or shelter from fire, and that associated with fire-prone habitats. Post-fire mortality estimates were linked to diet, diet specialisation, home range size, and susceptibility to introduced herbivores that damage or compete for resources. Longer-term population recovery estimates were linked to diet/habitat specialisation, susceptibility to introduced species species with slower life histories and shorter subadult dispersal distances also had lower recovery estimates. Across animal groups, experts estimated that recovery was poorest for species with pre-fire population decline and more threatened conservation status. Sustained management is likely needed to recover species with habitat and diet specialisations, slower life histories, pre-existing declines and threatened conservation statuses. This study shows that traits could help inform management priorities before and after future megafires, but further empirical data on animal fire response is essential.
Bird responses to targeted revegetation : 40 years of habitat enhancement at Clarkesdale Bird sanctuary, central-western Victoria
- Loyn, Richard, Faragher, J. T., Coutts, D. C., Palmer, Grant
- Authors: Loyn, Richard , Faragher, J. T. , Coutts, D. C. , Palmer, Grant
- Date: 2009
- Type: Text , Journal article
- Relation: Australian Field Ornithology Vol. 26, no. 3 (2009), p. 53-75
- Full Text:
- Reviewed:
- Description: A program of planting Australian shrubs and trees has been conducted in degraded farmland at the Clarkesdale Bird Sanctuary (central-western Victoria) since the 1960s, to address the issue of declining native birds, as perceived by the late landowner Gordon Clarke. The shrubs and trees were selected to attract birds, and included many species that were not native to the region. This form of management is often practised by private landholders (at various scales), but its effects are rarely documented. Bird surveys were conducted for this study between 1999 and 2001 at 27 sites: 11 in native eucalypt forest on ridges and slopes, 13 in planted areas on ridges and slopes, and three in planted areas on river-flats and a small gully (with three supplementary sites in a pine plantation). Total bird abundance and species per count were highest in the planted sites on river-flats and gully, and higher in the planted sites on ridges and slopes than in native forest on similar topography. Honeyeaters (Meliphagidae), Superb Fairy-wrens Malurus cyaneus, open-country birds, seed-eating birds and five insectivorous guilds reached their maximum abundance in planted sites. Barkforaging insectivores, canopy-foraging insectivores, frugivores and a generalist insectivore were marginally more common in native forest than in planted sites. Introduced birds were uncommon. Generalised linear modelling showed that total bird abundance was positively related to the cover of planted native vegetation, native low shrubs and young wattles Acacia spp. and to the presence of indigenous Cherry Ballart Exocarpos cupressiformis. Various guilds showed positive relationships with the cover of planted native vegetation, native low shrubs, young wattles, original old wattles, original old eucalypts and trees with small or large hollows. The planting program has provided new habitat for many native forest birds. A greater challenge is to address the needs of some uncommon species that have declined locally, such as the Brown Treecreeper Climacteris picumnus and Speckled Warbler Chthonicola sagittata.
- Authors: Loyn, Richard , Faragher, J. T. , Coutts, D. C. , Palmer, Grant
- Date: 2009
- Type: Text , Journal article
- Relation: Australian Field Ornithology Vol. 26, no. 3 (2009), p. 53-75
- Full Text:
- Reviewed:
- Description: A program of planting Australian shrubs and trees has been conducted in degraded farmland at the Clarkesdale Bird Sanctuary (central-western Victoria) since the 1960s, to address the issue of declining native birds, as perceived by the late landowner Gordon Clarke. The shrubs and trees were selected to attract birds, and included many species that were not native to the region. This form of management is often practised by private landholders (at various scales), but its effects are rarely documented. Bird surveys were conducted for this study between 1999 and 2001 at 27 sites: 11 in native eucalypt forest on ridges and slopes, 13 in planted areas on ridges and slopes, and three in planted areas on river-flats and a small gully (with three supplementary sites in a pine plantation). Total bird abundance and species per count were highest in the planted sites on river-flats and gully, and higher in the planted sites on ridges and slopes than in native forest on similar topography. Honeyeaters (Meliphagidae), Superb Fairy-wrens Malurus cyaneus, open-country birds, seed-eating birds and five insectivorous guilds reached their maximum abundance in planted sites. Barkforaging insectivores, canopy-foraging insectivores, frugivores and a generalist insectivore were marginally more common in native forest than in planted sites. Introduced birds were uncommon. Generalised linear modelling showed that total bird abundance was positively related to the cover of planted native vegetation, native low shrubs and young wattles Acacia spp. and to the presence of indigenous Cherry Ballart Exocarpos cupressiformis. Various guilds showed positive relationships with the cover of planted native vegetation, native low shrubs, young wattles, original old wattles, original old eucalypts and trees with small or large hollows. The planting program has provided new habitat for many native forest birds. A greater challenge is to address the needs of some uncommon species that have declined locally, such as the Brown Treecreeper Climacteris picumnus and Speckled Warbler Chthonicola sagittata.
Draft genome sequences of four citrobacter isolates recovered from wild australian shorebirds
- Smith, Hannah, Bean, David, Pitchers, William, Valcanis, Mary, Clarke, Rohan, Loyn, Richard, Hassell, Chris, Greenhill, Andrew
- Authors: Smith, Hannah , Bean, David , Pitchers, William , Valcanis, Mary , Clarke, Rohan , Loyn, Richard , Hassell, Chris , Greenhill, Andrew
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Resource Announcements Vol. 10, no. 1 (2021), p.
- Full Text:
- Reviewed:
- Description: Citrobacter is a ubiquitous bacterial genus whose members inhabit a variety of niches. Some species are clinically important for both antimicrobial resistance (AMR) carriage and as the cause of nosocomial infections. Surveillance of Citrobacter species in the environment can provide indicators of the spread of AMR genes outside clinical spaces. In this study, we present draft genome sequences of four Citrobacter isolates obtained from three species of wild Australian shorebirds. Copyright © 2021 Smith et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
- Authors: Smith, Hannah , Bean, David , Pitchers, William , Valcanis, Mary , Clarke, Rohan , Loyn, Richard , Hassell, Chris , Greenhill, Andrew
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Resource Announcements Vol. 10, no. 1 (2021), p.
- Full Text:
- Reviewed:
- Description: Citrobacter is a ubiquitous bacterial genus whose members inhabit a variety of niches. Some species are clinically important for both antimicrobial resistance (AMR) carriage and as the cause of nosocomial infections. Surveillance of Citrobacter species in the environment can provide indicators of the spread of AMR genes outside clinical spaces. In this study, we present draft genome sequences of four Citrobacter isolates obtained from three species of wild Australian shorebirds. Copyright © 2021 Smith et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Fire responses by bird guilds and species in heathy dry forests in central Victoria, Australia
- Kuchinke, Diana, di Stefano, Julian, Loyn, Richard, Gell, Peter, Palmer, Grant
- Authors: Kuchinke, Diana , di Stefano, Julian , Loyn, Richard , Gell, Peter , Palmer, Grant
- Date: 2023
- Type: Text , Journal article
- Relation: Forest Ecology and Management Vol. 535, no. (2023), p.
- Full Text:
- Reviewed:
- Description: Predicted increases in fire frequency and extent are being realised across Australia, bringing changes to the fire regime which may influence the availability of essential resources required by birds. However, few studies have examined either the impacts of fire frequency on birds or the impacts from both wildfire and planned burns, com bined. Birds were surveyed eight times across 84 sites in heathy dry forests in central Victoria, south-east Australia, from 2012 to 2014. Fire history records were retrieved from the 1970’s onwards, the time from which accurate planned burn records were kept. We developed mixed models to investigate how birds responded to time-since-fire and fire frequency, analysing total bird abundance, ten foraging guilds and 30 individual species. We found distinct responses by all modelled guilds and species to time-since-fire, along with evidence for responses to fire frequency. The greatest shifts in species’ abundances occurred during the first ten years post fire, with bird species commonly present across the stages greater than ten years since fire. For total bird abundance there was no statistically detectible difference between recently burnt forest (0-6 months) and other age classes. However, some guilds showed a significant drop in abundance in newly burnt vegetation (e.g. bark foragers, damp ground insectivores, those that feed on seeds close to the ground, tall shrub foragers). It is with guild and species’ responses that more differences across vegetation age classes became apparent. Significant increases in abundance were apparent in both the regrowth and new growth vegetation age classes, compared with older habitat (e.g. canopy foragers, damp ground insectivores, tall shrub foragers); open ground foragers were especially common in post-fire regrowth but then significantly declined. Other responses were more complex, with species’ preferences reflecting their foraging ecology. Some birds showed preferences across two age classes: sites that were young post-fire regrowth (6 months–2.5 years since fire) along with sites of old habitat (>35 years since fire), (e.g. Crimson Rosella, Scarlet Robin, Sulphur-crested Cockatoo), while some ground-foraging species became scarce in dense new-growth vegetation that appears 2.5–10 years post fire (e.g. Australian Magpie, Laughing Kookaburra and White-winged Chough). Such species may deserve specific management strategies to maintain populations in forests where substantial areas are burnt by wildfire or planned burns, over short periods of time. The model for total bird abundance showed a significant fire frequency response with birds preferring sites twice burnt within 35 years (e.g. bark and canopy-foraging guilds). Four guilds demonstrated a preference for sites frequently burnt, increasing in abundance as number of burns increased (nectarivores, open-ground foragers, seeds in trees foragers, tall shrub foragers). In contrast, two species appeared to prefer sites that had experienced low fire frequencies, a response not common to their guilds. Laughing Kookaburra (carnivore) and White-winged Chough (forages on open ground among trees) generally declined in abundance with increasing fire frequency. © 2023 Elsevier B.V.
- Authors: Kuchinke, Diana , di Stefano, Julian , Loyn, Richard , Gell, Peter , Palmer, Grant
- Date: 2023
- Type: Text , Journal article
- Relation: Forest Ecology and Management Vol. 535, no. (2023), p.
- Full Text:
- Reviewed:
- Description: Predicted increases in fire frequency and extent are being realised across Australia, bringing changes to the fire regime which may influence the availability of essential resources required by birds. However, few studies have examined either the impacts of fire frequency on birds or the impacts from both wildfire and planned burns, com bined. Birds were surveyed eight times across 84 sites in heathy dry forests in central Victoria, south-east Australia, from 2012 to 2014. Fire history records were retrieved from the 1970’s onwards, the time from which accurate planned burn records were kept. We developed mixed models to investigate how birds responded to time-since-fire and fire frequency, analysing total bird abundance, ten foraging guilds and 30 individual species. We found distinct responses by all modelled guilds and species to time-since-fire, along with evidence for responses to fire frequency. The greatest shifts in species’ abundances occurred during the first ten years post fire, with bird species commonly present across the stages greater than ten years since fire. For total bird abundance there was no statistically detectible difference between recently burnt forest (0-6 months) and other age classes. However, some guilds showed a significant drop in abundance in newly burnt vegetation (e.g. bark foragers, damp ground insectivores, those that feed on seeds close to the ground, tall shrub foragers). It is with guild and species’ responses that more differences across vegetation age classes became apparent. Significant increases in abundance were apparent in both the regrowth and new growth vegetation age classes, compared with older habitat (e.g. canopy foragers, damp ground insectivores, tall shrub foragers); open ground foragers were especially common in post-fire regrowth but then significantly declined. Other responses were more complex, with species’ preferences reflecting their foraging ecology. Some birds showed preferences across two age classes: sites that were young post-fire regrowth (6 months–2.5 years since fire) along with sites of old habitat (>35 years since fire), (e.g. Crimson Rosella, Scarlet Robin, Sulphur-crested Cockatoo), while some ground-foraging species became scarce in dense new-growth vegetation that appears 2.5–10 years post fire (e.g. Australian Magpie, Laughing Kookaburra and White-winged Chough). Such species may deserve specific management strategies to maintain populations in forests where substantial areas are burnt by wildfire or planned burns, over short periods of time. The model for total bird abundance showed a significant fire frequency response with birds preferring sites twice burnt within 35 years (e.g. bark and canopy-foraging guilds). Four guilds demonstrated a preference for sites frequently burnt, increasing in abundance as number of burns increased (nectarivores, open-ground foragers, seeds in trees foragers, tall shrub foragers). In contrast, two species appeared to prefer sites that had experienced low fire frequencies, a response not common to their guilds. Laughing Kookaburra (carnivore) and White-winged Chough (forages on open ground among trees) generally declined in abundance with increasing fire frequency. © 2023 Elsevier B.V.
Presence and antimicrobial resistance profiles of Escherichia coli, Enterococcusspp. and Salmonellasp. in 12 species of Australian shorebirds and terns
- Smith, Hannah, Bean, David, Clarke, Rohan, Loyn, Richard, Larkins, Jo-Ann, Hassell, Chris, Greenhill, Andrew
- Authors: Smith, Hannah , Bean, David , Clarke, Rohan , Loyn, Richard , Larkins, Jo-Ann , Hassell, Chris , Greenhill, Andrew
- Date: 2022
- Type: Text , Journal article
- Relation: Zoonoses and Public Health Vol. 69, no. 6 (2022), p. 615-624
- Full Text:
- Reviewed:
- Description: Antibiotic resistance is an ongoing threat to both human and animal health. Migratory birds are a potential vector for the spread of novel pathogens and antibiotic resistance genes. To date, there has been no comprehensive study investigating the presence of antibiotic resistance (AMR) in the bacteria of Australian shorebirds or terns. In the current study, 1022 individual birds representing 12 species were sampled across three states of Australia (Victoria, South Australia, and Western Australia) and tested for the presence of phenotypically resistant strains of three bacteria with potential to be zoonotic pathogens; Escherichia coli, Enterococcusspp., and Salmonellasp. In total, 206 E. coli, 266 Enterococcusspp., and 20 Salmonellasp. isolates were recovered, with AMR detected in 42% of E. coli, 85% of Enterococcusspp., and 10% of Salmonellasp. Phenotypic resistance was commonly detected to erythromycin (79% of Enterococcusspp.), ciprofloxacin (31% of Enterococcusspp.) and streptomycin (21% of E. coli). Resident birds were more likely to carry AMR bacteria than migratory birds (p ≤.001). Bacteria isolated from shorebirds and terns are commonly resistant to at least one antibiotic, suggesting that wild bird populations serve as a potential reservoir and vector for AMR bacteria. However, globally emerging phenotypes of multidrug-resistant bacteria were not detected in Australian shorebirds. This study provides baseline data of the carriage of AMR bacteria in Australian shorebirds and terns. © 2022 The Authors. Zoonoses and Public Health published by Wiley-VCH GmbH.
- Authors: Smith, Hannah , Bean, David , Clarke, Rohan , Loyn, Richard , Larkins, Jo-Ann , Hassell, Chris , Greenhill, Andrew
- Date: 2022
- Type: Text , Journal article
- Relation: Zoonoses and Public Health Vol. 69, no. 6 (2022), p. 615-624
- Full Text:
- Reviewed:
- Description: Antibiotic resistance is an ongoing threat to both human and animal health. Migratory birds are a potential vector for the spread of novel pathogens and antibiotic resistance genes. To date, there has been no comprehensive study investigating the presence of antibiotic resistance (AMR) in the bacteria of Australian shorebirds or terns. In the current study, 1022 individual birds representing 12 species were sampled across three states of Australia (Victoria, South Australia, and Western Australia) and tested for the presence of phenotypically resistant strains of three bacteria with potential to be zoonotic pathogens; Escherichia coli, Enterococcusspp., and Salmonellasp. In total, 206 E. coli, 266 Enterococcusspp., and 20 Salmonellasp. isolates were recovered, with AMR detected in 42% of E. coli, 85% of Enterococcusspp., and 10% of Salmonellasp. Phenotypic resistance was commonly detected to erythromycin (79% of Enterococcusspp.), ciprofloxacin (31% of Enterococcusspp.) and streptomycin (21% of E. coli). Resident birds were more likely to carry AMR bacteria than migratory birds (p ≤.001). Bacteria isolated from shorebirds and terns are commonly resistant to at least one antibiotic, suggesting that wild bird populations serve as a potential reservoir and vector for AMR bacteria. However, globally emerging phenotypes of multidrug-resistant bacteria were not detected in Australian shorebirds. This study provides baseline data of the carriage of AMR bacteria in Australian shorebirds and terns. © 2022 The Authors. Zoonoses and Public Health published by Wiley-VCH GmbH.
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