A Decentralized Patient Agent Controlled Blockchain for Remote Patient Monitoring
- Authors: Uddin, Ashraf , Stranieri, Andrew , Gondal, Iqbal , Balasubramanian, Venki
- Date: 2019
- Type: Text , Conference proceedings
- Relation: 15th International Conference on Wireless and Mobile Computing, Networking and Communications, WiMob 2019 Vol. 2019-October, p. 207-214
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- Description: Blockchain emerging for healthcare provides a secure, decentralized and patient driven record management system. However, the storage of data generated from IoT devices in remote patient management applications requires a fast consensus mechanism. In this paper, we propose a lightweight consensus mechanism and a decentralized patient software agent to control a remote patient monitoring (RPM) system. The decentralized RPM architecture includes devices at three levels; 1) Body Area Sensor Network-medical sensors typically on or in patient's body transmitting data to a Smartphone, 2) Fog/Edge, and 3) Cloud. We propose that a Patient Agent(PA) software replicated on the Smartphone, Fog and Cloud servers processes medical data to ensure reliable, secure and private communication. Performance analysis has been conducted to demonstrate the feasibility of the proposed Blockchain leveraged, distributed Patient Agent controlled remote patient monitoring system. © 2019 IEEE.
- Description: E1
A heuristic gene regulatory networks model for cardiac function and pathology
- Authors: Zarnegar, Armita , Vamplew, Peter , Stranieri, Andrew , Jelinek, Herbert
- Date: 2016
- Type: Text , Conference proceedings
- Relation: 2016 Computing in Cardiology Conference (CinC); Vancouver; 11-14th Sept, 2016
- Full Text: false
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- Description: Genome-wide association studies (GWAS) and next-generation sequencing (NGS) has led to an increase in information about the human genome and cardiovascular disease. Understanding the role of genes in cardiac function and pathology requires modeling gene interactions and identification of regulatory genes as part of a gene regulatory network (GRN). Feature selection and data reduction not sufficient and require domain knowledge to deal with large data. We propose three novel innovations in constructing a GRN based on heuristics. A 2D Visualised Co-regulation function. Post-processing to identify gene-gene interactions. Finally a threshold algorithm is applied to identify the hub genes that provide the backbone of the GRN. The 2D Visualized Co-regulation function performed significantly better compared to the Pearson's correlation for measuring pairwise associations (t=3.46, df=5, p=0.018). The F-measure, improved from 0.11 to 0.12. The hub network provided a 60% improvement to that reported in the literature. The performance of the hub network was then also compared against ARACNe and performed significantly better (p=0.024). We conclude that a heuristics approach in developing GRNs has potential to improve our understanding of gene regulation and interaction in diverse biological function and disease.
A model for the introduction of Ayurvedic and Allopathic Electronic Health Records in Sri Lanka
- Authors: Stranieri, Andrew , Sahama, Tony , Butler-Henderson, Kerryn , Perera, Kamal
- Date: 2016
- Type: Text , Conference proceedings
- Relation: 2016 IEEE International Symposium on Technology and Society; Trivandrum, Kerala, India; 20th-22nd October 2016 p. 56-61
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- Description: Fully integrated electronic health records (EHR) provide healthcare providers and patients access to records across a health care system and promise efficient and effective provision of health care. However, fully integrated records have proven to be very expensive and difficult to establish. Currently. EHR's have been developed largely to accommodate Western medicine events. These barriers impact on the introduction of EHR's in Sri Lanka, where health budgets are already stretched and Ayurvedic medicine is routinely practiced alongside Allopathic medicine. This article identifies requirements for EHR in the Sri Lankan context and advances a model for the introduction of EHR's that suits that context. The model is justified by drawing on insights and experiences with EHR in Western nations.
A patient agent to manage blockchains for remote patient monitoring
- Authors: Uddin, Ashraf , Stranieri, Andrew , Gondal, Iqbal , Balasubramanian, Venki
- Date: 2018
- Type: Text , Conference proceedings
- Relation: 7th International Conference on Global Telehealth, GT 2018; Colombo, Sri Lanka; 10th-11th October 2018; published in Studies in Health Technology and Informatics Vol. 254, p. 105-115
- Full Text: false
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- Description: Continuous monitoring of patient's physiological signs has the potential to augment traditional medical practice, particularly in developing countries that have a shortage of healthcare professionals. However, continuously streamed data presents additional security, storage and retrieval challenges and further inhibits initiatives to integrate data to form electronic health record systems. Blockchain technologies enable data to be stored securely and inexpensively without recourse to a trusted authority. Blockchain technologies also promise to provide architectures for electronic health records that do not require huge government expenditure that challenge developing nations. However, Blockchain deployment, particularly with streamed data challenges existing Blockchain algorithms that take too long to place data in a block, and have no mechanism to determine whether every data point in every stream should be stored in such a secure way. This article presents an architecture that involves a Patient Agent, coordinating the insertion of continuous data streams into Blockchains to form an electronic health record.
- Description: Studies in Health Technology and Informatics
A rule based inference model to establish strategy-process relationship
- Authors: Dinh, Loan , Karmakar, Gour , Kamruzzaman, Joarder , Stranieri, Andrew
- Date: 2017
- Type: Text , Conference proceedings
- Relation: 30th International Business Information Management Association Conference - Vision 2020: Sustainable Economic development, Innovation Management, and Global Growth, IBIMA 2017; Madrid, Spain; 8th-9th November 2017 Vol. 2017-January, p. 4544-4556
- Full Text: false
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- Description: An effective relationship between business processes and their relevant strategies helps enterprises achieve their goals. As a business organisation changes quickly, business processes implement their relevant business operations for efficiency. It is important to know which business process achieves which business strategies dynamically. To the best of our knowledge, there exists a framework which aims to automatically determine the strategy-process relationship (Morrison et al. 2011). However, this framework can only work when the effect of the business process is known, but it is difficult to determine such effect accurately. Moreover, by optimising business processes to satisfy business strategies, higher efficiency may be achieved but there is a high chance of losing discriminative information. It therefore creates certain level of uncertainty in achieving accurate strategy-process relationship. To reduce this uncertainty and determine the relationship accurately between business processes and their relevant strategies as defined by business domain experts, in this paper, we introduce a rule-based inference model. This model not only helps business organisations realize which business processes need to be involved for the organisation to achieve their goals when strategies are made, but also reduces the possibility of losing important details from business process optimisation. We have developed a business case to validate our proposed model and the results show that our model can infer the relation accurately for each rule defined for the related business case.
An Agile group aware process beyond CRISP-DM: A hospital data mining case study
- Authors: Sharma, Vishakha , Stranieri, Andrew , Ugon, Julien , Martin, Laura
- Date: 2017
- Type: Text , Conference proceedings
- Relation: ICCDA '17: Proceedings of the International Conference on Computer and Data Analysis May 2017 p. 109-113
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- Description: The CRISP-DM methodology is commonly used in data analytics exercises within an organisation to provide system and structure to data mining processes. However, in providing a rigorous framework, CRISP-DM overlooks two facets of data analytics in organisational contexts; data mining exercises are far more agile and subject to change than presumed in CRISP-DM and central decisions regarding the interpretation of patterns discovered and the direction of analytics exercises are typically not made by individuals but by committees or groups within an organisation. The current study provides a case study of data mining in a hospital setting and suggests how the agile nature of an analytics exercise and the group reasoning inherent in key decisions can be accommodated within a CRISP-DM methodology.
An argument structure abstraction for Bayesian belief networks: Just outcomes in on-line dispute resolution
- Authors: Muecke, Nial , Stranieri, Andrew
- Date: 2008
- Type: Text , Conference proceedings
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- Description: There are many different approaches for settling disputes on-line, such as simple email systems, fixed bid systems and intelligent systems. However, to date there have been no attempts to integrate decision support methods into the dispute resolution process for the purpose of supporting outcomes that are consistent with judicial reasoning. This paper describes how a model of judicial reasoning can be used to assist divorcees with the resolution of property issues online, in a manner that is consistent with decisions a judge would make if the matter was heard in Court. The approach uses an argument based model of the discretionary nature of decisions made by judges in Australian Family Law. This is integrated with a protocol for online dispute dialogue. Predictions of the likelihood of alternates outcomes is achieved with a series of Bayesian Belief Networks
An efficient selective miner consensus protocol in blockchain oriented iot smart monitoring
- Authors: Uddin, Ashraf , Stranieri, Andrew , Gondal, Iqbal , Balasubramanian, Venki
- Date: 2019
- Type: Text , Conference proceedings , Conference paper
- Relation: 2019 IEEE International Conference on Industrial Technology, ICIT 2019; Melbourne; Australia; 13th-15th February 2019 Vol. 2019-February, p. 1135-1142
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- Description: Blockchains have been widely used in Internet of Things(IoT) applications including smart cities, smart home and smart governance to provide high levels of security and privacy. In this article, we advance a Blockchain based decentralized architecture for the storage of IoT data produced from smart home/cities. The architecture includes a secure communication protocol using a sign-encryption technique between power constrained IoT devices and a Gateway. The sign encryption also preserves privacy. We propose that a Software Agent executing on the Gateway selects a Miner node using performance parameters of Miners. Simulations demonstrate that the recommended Miner selection outperforms Proof of Works selection used in Bitcoin and Random Miner Selection.
- Description: Proceedings of the IEEE International Conference on Industrial Technology
Atrial fibrillation analysis for real time patient monitoring
- Authors: Allami, Ragheed , Stranieri, Andrew , Marzbanrad, Faezeh , Balasubramanian, Venki , Jelinek, Herbert
- Date: 2017
- Type: Text , Conference proceedings , Conference paper
- Relation: 44th Computing in Cardiology Conference, CinC 2017 Vol. 44, p. 1-4
- Full Text: false
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- Description: Atrial Fibrillation (AF) can lead to life-threatening conditions such as stroke and heart failure. The instant recognition of life-threatening cardiac arrhythmias based on a 3-lead ECG to record a Lead II configuration for a few seconds is a challenging problem of clinical significance. Five consecutive ECG beats that were identified by a cardiologist to characterise an AF episode and five consecutive heartbeat intervals representing an irregular RR intervals episode were analysed. The detection and analysis of P waves as the morphological features of AF was executed based on two template matching methods. An AF detector was developed by combining the correlation coefficients based on the template matching methods and the standard deviation of the RR intervals. The AF detector was then applied to classify 5 consecutive beats as AF or non-AF based on thresholding the calculated irregularity. The proposed algorithm was tested on the MIT-BIH Atrial Fibrillation and the Challenge 2017 databases. The proposed method resulted in an improved sensitivity, specificity and accuracy of 97.60%, 98.20% and 99% respectively compared to recent published methods. In addition, the proposed method is suitable for real-time patient monitoring as it is computationally simple and requires only a few seconds of ECG recording to detect an AF rhythm. © 2017 IEEE Computer Society. All rights reserved.
Automatic sleep stage identification: difficulties and possible solutions
- Authors: Sukhorukova, Nadezda , Stranieri, Andrew , Ofoghi, Bahadorreza , Vamplew, Peter , Saleem, Muhammad Saad , Ma, Liping , Ugon, Adrien , Ugon, Julien , Muecke, Nial , Amiel, Hélène , Philippe, Carole , Bani-Mustafa, Ahmed , Huda, Shamsul , Bertoli, Marcello , Levy, P , Ganascia, J.G
- Date: 2010
- Type: Text , Conference proceedings
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- Description: The diagnosis of many sleep disorders is a labour intensive task that involves the specialised interpretation of numerous signals including brain wave, breath and heart rate captured in overnight polysomnogram sessions. The automation of diagnoses is challenging for data mining algorithms because the data sets are extremely large and noisy, the signals are complex and specialist's analyses vary. This work reports on the adaptation of approaches from four fields; neural networks, mathematical optimisation, financial forecasting and frequency domain analysis to the problem of automatically determing a patient's stage of sleep. Results, though preliminary, are promising and indicate that combined approaches may prove more fruitful than the reliance on a approach.
Blockchain leveraged task migration in body area sensor networks
- Authors: Uddin, Ashraf , Stranieri, Andrew , Gondal, Iqbal , Balasubramanian, Venki
- Date: 2019
- Type: Text , Conference proceedings , Conference paper
- Relation: 25th Asia-Pacific Conference on Communications, APCC 2019 p. 177-184
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- Description: Blockchain technologies emerging for healthcare support secure health data sharing with greater interoperability among different heterogeneous systems. However, the collection and storage of data generated from Body Area Sensor Net-works(BASN) for migration to high processing power computing services requires an efficient BASN architecture. We present a decentralized BASN architecture that involves devices at three levels; 1) Body Area Sensor Network-medical sensors typically on or in patient's body transmitting data to a Smartphone, 2) Fog/Edge, and 3) Cloud. We propose that a Patient Agent(PA) replicated on the Smartphone, Fog and Cloud servers processes medical data and execute a task offloading algorithm by leveraging a Blockchain. Performance analysis is conducted to demonstrate the feasibility of the proposed Blockchain leveraged, distributed Patient Agent controlled BASN. © 2019 IEEE.
- Description: E1
Business context in big data analytics
- Authors: Dinh, Loan , Karmakar, Gour , Kamruzzaman, Joarder , Stranieri, Andrew
- Date: 2015
- Type: Text , Conference proceedings
- Relation: 10th International Conference on Information, Communications and Signal Processing, ICICS 2015; Singapore; 2nd-4th December 2015
- Full Text: false
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- Description: Big data are generated from a variety of sources having different representation forms and formats, it raises a research question as how important data relevant to a business context can be captured and analyzed more accurately to represent deep and relevant business insight. There is a number of existing big data analytic methods available in the literature that consider contextual information such as the context of a query and its users, the context of a query-driven recommendation system, etc. However, these methods still have many challenges and none of them has considered the context of a business in either data collection or analysis process. To address this research gap, we introduce a big data analytic technique which embeds a business context in terms of the significance level of a query into the bedrock of its data collection and analysis process. We implemented our proposed model under the framework of Hadoop considering the context of a grocery shop. The results exhibit that our method substantially increases the amount of data collection and their deep insight with an increase of the significance level value. © 2015 IEEE.
- Description: 2015 10th International Conference on Information, Communications and Signal Processing, ICICS 2015
Comparing Pixel N-grams and bag of visual word features for the classification of diabetic retinopathy
- Authors: Kulkarni, Pradnya , Stranieri, Andrew , Jelinek, Herbert
- Date: 2019
- Type: Text , Conference proceedings
- Relation: ACSW 2019: Australasian Computer Science Week 2019;Sydney NSW Australia; January 29 - 31, 2019; published in Proceedings of the Australasian Computer Science Week Multiconference p. 1-7
- Full Text: false
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- Description: The extraction of Bag of Visual Words (BoVW) features from retinal images for automated classification has been shown to be effective but computationally expensive. Histogram and co-variance matrix features do not generally result in models that have the same predictive accuracy as BoVW and are still computationally expensive. The discovery of features that result in accurate image classification on computationally constrained devices such as smartphones would enable new and promising applications for image classification. For example, smartphone retinal cameras can conceivably make diabetic retinopathy widely available and potentially reduce undiagnosed retinopathy if it could be achieved with computationally simple classification algorithms. A novel image feature extraction technique inspired by N-grams in text mining, called 'Pixel N-grams' is described that can serve this purpose. Results on mammogram and texture classification have shown high accuracy despite the reduced computational complexity. However retinal scan classification results using Pixel N-grams lag behind BoVW approaches. An explanation for the relative poor performance of Pixel N-grams with diabetic retinopathy that draws on concepts associated with the No Free Lunch theorem are presented.
Comparison of pixel N-Grams with histogram, Haralick's features and bag-of-visual-words for texture image classification
- Authors: Kulkarni, Pradnya , Stranieri, Andrew
- Date: 2018
- Type: Text , Conference proceedings
- Relation: IEEE 3rd International Conference on Convergence in Technology: Pune, India ; April 6th-8th, 2018 p. 1-4
- Full Text: false
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- Description: Texture image classification is very useful in many domains. It has been tried using statistical, spectral and structural approaches. A novel Pixel N-grams technique has emerged for image feature extraction recently. The aim of this paper is to analyse the efficacy of Pixel N-grams technique for texture image classification in comparison with the traditional techniques namely Intensity histogram, Haralick’s features based on co-occurrence matrix and state-of-the-art Bag-of-Visual-Words (BoVW). The experiments were carried out on the benchmark UIUC texture dataset using SVM classifier. The classification performance was compared using Fscore, Recall and Precision. The classification results using Pixel N-gram were significantly better than that using Intensity histogram and Haralick features whereas, they were comparable with the BoVW approach.
Data analytics to select markers and cut-off values for clinical scoring
- Authors: Stranieri, Andrew , Yatsko, Andrew , Venkatraman, Sitalakshmi , Jelinek, Herbert
- Date: 2018
- Type: Text , Conference proceedings
- Relation: ACSW '18: Proceedings of the Australasian Computer Science Week Multiconference; Brisbane; 29th January -2nd February 2018 p. 1-6
- Full Text: false
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- Description: Scoring systems such as the Glasgow-Coma scale used to assess consciousness AusDrisk to assess the risk of diabetes, are prevalent in clinical practice. Scoring systems typically include relevant variables with ordinal values where each value is assigned a weight. Weights for selected values are summed and compared to thresholds for health care professionals to rapidly generate a score. Scoring systems are prevalent in clinical practice because they are easy and quick to use. However, most scoring systems comprise many variables and require some time to calculate an final score. Further, expensive population-wide studies are required to validate a scoring system. In this article, we present a new approach for the generation of a scoring system. The approach uses a search procedure invoking iterative decision tree induction to identify a suite of scoring rules, each of which requires values on only two variables. Twelve scoring rules were discovered using the approach, from an Australian screening program for the assessment of Type 2 Diabetes risk. However, classifications from the 12 rules can conflict. In this paper we argue that a simple rule preference relation is sufficient for the resolution of rule conflicts.
Data mining Traditional Chinese Medicine (TCM) : Lessons learnt from mining in law and allopathic medicine
- Authors: Stranieri, Andrew , Sahama, Tony
- Date: 2012
- Type: Text , Conference proceedings
- Full Text: false
- Description: Key decisions at the collection, pre-processing, transformation, mining and interpretation phase of any knowledge discovery from database (KDD) process depend heavily on assumptions and theoretical perspectives relating to the type of task to be performed and characteristics of data sourced. In this article, we compare and contrast theoretical perspectives and assumptions taken in data mining exercises in the legal domain with those adopted in data mining in TCM and allopathic medicine. The juxtaposition results in insights for the application of KDD for Traditional Chinese Medicine. © 2012 IEEE.
- Description: 2003009797
Dynamically recommending repositories for health data : a machine learning model
- Authors: Uddin, Md Ashraf , Stranieri, Andrew , Gondal, Iqbal , Balasubramanian, Venki
- Date: 2020
- Type: Text , Conference proceedings
- Relation: 2020 Australasian Computer Science Week Multiconference, ACSW 2020
- Full Text: false
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- Description: Recently, a wide range of digital health record repositories has emerged. These include Electronic Health record managed by the government, Electronic Medical Record (EMR) managed by healthcare providers, Personal Health Record (PHR) managed directly by the patient and new Blockchain-based systems mainly managed by technologies. Health record repositories differ from one another on the level of security, privacy, and quality of services (QoS) they provide. Health data stored in these repositories also varies from patient to patient in sensitivity, and significance depending on medical, personal preference, and other factors. Decisions regarding which digital record repository is most appropriate for the storage of each data item at every point in time are complex and nuanced. The challenges are exacerbated with health data continuously streamed from wearable sensors. In this paper, we propose a recommendation model for health data storage that can accommodate patient preferences and make storage decisions rapidly, in real-time, even with streamed data. The model maps health data to be stored in the repositories. The mapping between health data features and characteristics of each repository is learned using a machine learning-based classifier mediated through clinical rules. Evaluation results demonstrate the model's feasibility. © 2020 ACM.
- Description: E1
ECG reduction for wearable sensor
- Authors: Allami, Ragheed , Stranieri, Andrew , Balasubramanian, Venki , Jelinek, Herbert
- Date: 2016
- Type: Text , Conference proceedings
- Relation: 2016 12th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS); Naples, Italy; 28th November-1st December 2016 p. 520-525
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- Description: The transmission, storage and analysis of electrocardiogram (ECG) data in real-time is essential for remote patient monitoring with wearable ECG devices and mobile ECG contexts. However, this remains a challenge to achieve within the processing power and the storage capacity of mobile devices. ECG reduction algorithms have an important role to play in reducing the processing requirements for mobile devices, however many existing ECG reduction and compression algorithms are computationally expensive to execute in mobile devices and have not been designed for real-time computation and incremental data arrival. In this paper, we describe a computationally naive, yet effective, algorithm that achieves high ECG reduction rates while maintaining key diagnostic features including PR, QRS, ST, QT and RR intervals. While reduction does not enable ECG waves to be reproduced, the ability to transmit key indicators (diagnostic features) using minimal computational resources, is particularly useful in mobile health contexts involving power constrained sensors and devices. Results of the proposed reduction algorithm indicate that the proposed algorithm outperforms other ECG reduction algorithms at a reduction/compression ratio (CR) of 5:1. If power or processing capacity is low, the algorithm can readily switch to a compression ratio of up to 10: 1 while still maintaining an error rate below 10%.
Empirical investigation of consensus clustering for large ECG data sets
- Authors: Kelarev, Andrei , Stranieri, Andrew , Yearwood, John , Jelinek, Herbert
- Date: 2012
- Type: Text , Conference proceedings
- Full Text: false
- Description: This article investigates a novel machine learning approach applying consensus clustering in conjunction with classification for the data mining of very large and highly dimensional ECG data sets. To obtain robust and stable clusterings, consensus functions can be applied for clustering ensembles combining a multitude of independent initial clusterings. Direct applications of consensus functions to highly dimensional ECG data sets remain computationally expensive and impracticable. We introduce a multistage scheme including various procedures for dimensionality reduction, consensus clustering of randomized samples, followed by the use of a fast supervised classification algorithm. Applying the Hybrid Bipartite Graph Formulation combined with rank ordering and SMO we obtained an area under the receiver operating curve of 0.987. The performance of the classification algorithm at the final stage is crucial for the effectiveness of this technique. It can be regarded as an indication of the reliability, quality and stability of the combined consensus clustering. © 2012 IEEE.
Empirical investigation of multi-tier ensembles for the detection of cardiac autonomic neuropathy using subsets of the Ewing features
- Authors: Abawajy, Jemal , Kelarev, Andrei , Stranieri, Andrew , Jelinek, Herbert
- Date: 2012
- Type: Text , Conference proceedings
- Full Text:
- Description: This article is devoted to an empirical investigation of performance of several new large multi-tier ensembles for the detection of cardiac autonomic neuropathy (CAN) in diabetes patients using sub-sets of the Ewing features. We used new data collected by the diabetes screening research initiative (DiScRi) project, which is more than ten times larger than the data set originally used by Ewing in the investigation of CAN. The results show that new multi-tier ensembles achieved better performance compared with the outcomes published in the literature previously. The best accuracy 97.74% of the detection of CAN has been achieved by the novel multi-tier combination of AdaBoost and Bagging, where AdaBoost is used at the top tier and Bagging is used at the middle tier, for the set consisting of the following four Ewing features: the deep breathing heart rate change, the Valsalva manoeuvre heart rate change, the hand grip blood pressure change and the lying to standing blood pressure change.