Combining segmental semi-Markov models with neural networks for protein secondary structure prediction
- Authors: Bidargaddi, Niranjan , Chetty, Madhu , Kamruzzaman, Joarder
- Date: 2009
- Type: Text , Journal article
- Relation: Neurocomputing Vol. 72, no. 3943-3950 (2009), p.3943-3950
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- Description: Predicting the secondary structure of proteins from a primary sequence alone has been variously approached from either a classification or a generative model perspective. The most prominent classification methods have used neural networks, which involves mappings from a local window of residues in the sequence to the structural state of the central residue in the window, thus capturing the local interactions effectively. However, they fail to capture distant interactions among residues. The generative models based on Bayesian segmentation capture sequence structure relationships using generalized hidden Markov models with explicit state duration. They capture non-local interactions through a joint sequence-structure probability distribution based on structural segments. In this paper, we investigate a combined architecture of Bayesian segmentation at the first stage and neural network at the second stage which captures both local and non-local correlation, to increase the single sequence prediction accuracy. The combined architecture is further enhanced by using neural network optimization and ensemble techniques.
Application of artificial intelligence to improve quality of service in computer networks
- Authors: Ahmad, Iftekhar , Kamruzzaman, Joarder , Habibi, Daryoush
- Date: 2012
- Type: Text , Journal article
- Relation: Neural Computing & Applications Vol. 21, no. 1 (2012), p. 81-90
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- Description: Resource sharing between book-ahead (BA) and instantaneous request (IR) reservation often results in high preemption rates for ongoing IR calls in computer networks. High IR call preemption rates cause interruptions to service continuity, which is considered detrimental in a QoS-enabled network. A number of call admission control models have been proposed in the literature to reduce preemption rates for ongoing IR calls. Many of these models use a tuning parameter to achieve certain level of preemption rate. This paper presents an artificial neural network (ANN) model to dynamically control the preemption rate of ongoing calls in a QoS-enabled network. The model maps network traffic parameters and desired operating preemption rate by network operator providing the best for the network under consideration into appropriate tuning parameter. Once trained, this model can be used to automatically estimate the tuning parameter value necessary to achieve the desired operating preemption rates. Simulation results show that the preemption rate attained by the model closely matches with the target rate.
A new convergence rate estimation of general artificial immune algorithm
- Authors: Hong, Lu , Kamruzzaman, Joarder
- Date: 2015
- Type: Text , Journal article
- Relation: Journal of Intelligent and Fuzzy Systems Vol. 28, no. 6 (2015), p. 2793-2800
- Full Text: false
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- Description: Artificial immune algorithm has been used widely and successfully in many computational optimization areas, but the theoretical research exploring the convergence rate characteristics of artificial immune algorithm is yet inadequate. In this paper, instead of the traditional eigenvalue estimation of state transition matrix, stochastic processes theory is introduced to study the convergence rate of general artificial immune algorithm. The method begins by analyzing the necessary condition for convergence of artificial immune algorithm and takes it as the sufficient condition for a class of general artificial immune algorithm. Through the definition of Markov chain convergence rate, a probability strong convergence rate estimation method of general artificial immune algorithm is proposed. This method is judged by the final convergence of the best antibody, which overcomes the conservative defect of traditional estimation methods. The simulation results show the correctness of the proposed estimation method, and the estimation method can be used to judge the convergence and convergence rate of a class of artificial immune algorithms. This research has a certain theoretical reference value to optimize the convergence rate in the practical application of artificial immune algorithm.