Human strongyloidiasis : complexities and pathways forward
- Buonfrate, Dora, Bradbury, Richard, Watts, Matthew, Bisoffi, Zeno
- Authors: Buonfrate, Dora , Bradbury, Richard , Watts, Matthew , Bisoffi, Zeno
- Date: 2023
- Type: Text , Journal article , Review
- Relation: Clinical Microbiology Reviews Vol. 36, no. 4 (2023), p.
- Full Text:
- Reviewed:
- Description: Strongyloidiasis is a World Health Organization neglected tropical disease usually caused by Strongyloides stercoralis, a parasitic worm with a complex life cycle. Globally, 300-600 million people are infected through contact with fecally contaminated soil. An autoinfective component of the life cycle can lead to chronic infection that may be asymptomatic or cause long-term symptoms, including malnourishment in children. Low larval output can limit the sensitivity of detection in stool, with serology being effectivebut less sensitive in immunocompromise. Host immunosuppression can trigger catastrophic, fatal hyperinfection/dissemination, where large numbers of larvae pierce the bowel wall and disseminate throughout the organs. Stable disease is effectivelytreated by single-dose ivermectin, with disease in immunocompromised patients treated with multiple doses. Strategies for management include raising awareness, clarifying zoonotic potential, the development and use of effectivediagnostic tests for epidemiological studies and individual diagnosis, and the implementation of treatment programs with research into therapeutic alternatives and medication safety. © 2023 American Society for Microbiology. All rights reserved.
- Authors: Buonfrate, Dora , Bradbury, Richard , Watts, Matthew , Bisoffi, Zeno
- Date: 2023
- Type: Text , Journal article , Review
- Relation: Clinical Microbiology Reviews Vol. 36, no. 4 (2023), p.
- Full Text:
- Reviewed:
- Description: Strongyloidiasis is a World Health Organization neglected tropical disease usually caused by Strongyloides stercoralis, a parasitic worm with a complex life cycle. Globally, 300-600 million people are infected through contact with fecally contaminated soil. An autoinfective component of the life cycle can lead to chronic infection that may be asymptomatic or cause long-term symptoms, including malnourishment in children. Low larval output can limit the sensitivity of detection in stool, with serology being effectivebut less sensitive in immunocompromise. Host immunosuppression can trigger catastrophic, fatal hyperinfection/dissemination, where large numbers of larvae pierce the bowel wall and disseminate throughout the organs. Stable disease is effectivelytreated by single-dose ivermectin, with disease in immunocompromised patients treated with multiple doses. Strategies for management include raising awareness, clarifying zoonotic potential, the development and use of effectivediagnostic tests for epidemiological studies and individual diagnosis, and the implementation of treatment programs with research into therapeutic alternatives and medication safety. © 2023 American Society for Microbiology. All rights reserved.
Evaluation of the performance of Ortho T. cruzi ELISA test system for the detection of antibodies to Trypanosoma cruzi
- Rivera, Hilda, McAuliffe, Isabel, Aderohunmu, TaLesa, Wiegand, Ryan, Montgomery, Susan, Bradbury, Richard, Handali, Sukwan
- Authors: Rivera, Hilda , McAuliffe, Isabel , Aderohunmu, TaLesa , Wiegand, Ryan , Montgomery, Susan , Bradbury, Richard , Handali, Sukwan
- Date: 2022
- Type: Text , Journal article
- Relation: Journal of Clinical Microbiology Vol. 60, no. 8 (2022), p.
- Full Text:
- Reviewed:
- Description: The serologic diagnosis of chronic Chagas disease, caused by infection with the parasite Trypanosoma cruzi, is challenging and lacks a gold-standard assay. To overcome the problem, CDC uses an algorithm that uses two tests on different platforms and applies a third test as a tiebreaker. The Ortho T. cruzi ELISA Test System from Ortho Diagnostics was cleared by FDA for clinical diagnosis usage. We evaluated this test against the CDC algorithm for chronic Chagas disease. We tested several sets of serum specimens: 104 specimens tested positive for T. cruzi specific antibody and 283 (including 30 specimens positive for antibody to Leishmania spp.) tested negative based on the current CDC chronic T. cruzi infection diagnostic testing algorithm. Concordance of the Ortho T. cruzi ELISA Test System with the CDC algorithm result was 90% (95% CI 87 to 93%) overall and 92% (95% CI 89 to 95%) when excluding Leishmania spp. antibody positive specimens. The cross-reactivity of the Ortho T. cruzi ELISA Test System was 37% to Leishmania spp. serologically positive specimens, 1% to specimens from patients diagnosed with other parasitic infections, and 0% against specimens from a US noninfected population. In conclusion, the Ortho T. cruzi ELISA Test System compares well against the CDC diagnostic algorithm for chronic Chagas disease. The availability of this FDA-cleared assay will improve the chronic Chagas disease diagnosis. © 2022 American Society for Microbiology. All rights reserved.
- Authors: Rivera, Hilda , McAuliffe, Isabel , Aderohunmu, TaLesa , Wiegand, Ryan , Montgomery, Susan , Bradbury, Richard , Handali, Sukwan
- Date: 2022
- Type: Text , Journal article
- Relation: Journal of Clinical Microbiology Vol. 60, no. 8 (2022), p.
- Full Text:
- Reviewed:
- Description: The serologic diagnosis of chronic Chagas disease, caused by infection with the parasite Trypanosoma cruzi, is challenging and lacks a gold-standard assay. To overcome the problem, CDC uses an algorithm that uses two tests on different platforms and applies a third test as a tiebreaker. The Ortho T. cruzi ELISA Test System from Ortho Diagnostics was cleared by FDA for clinical diagnosis usage. We evaluated this test against the CDC algorithm for chronic Chagas disease. We tested several sets of serum specimens: 104 specimens tested positive for T. cruzi specific antibody and 283 (including 30 specimens positive for antibody to Leishmania spp.) tested negative based on the current CDC chronic T. cruzi infection diagnostic testing algorithm. Concordance of the Ortho T. cruzi ELISA Test System with the CDC algorithm result was 90% (95% CI 87 to 93%) overall and 92% (95% CI 89 to 95%) when excluding Leishmania spp. antibody positive specimens. The cross-reactivity of the Ortho T. cruzi ELISA Test System was 37% to Leishmania spp. serologically positive specimens, 1% to specimens from patients diagnosed with other parasitic infections, and 0% against specimens from a US noninfected population. In conclusion, the Ortho T. cruzi ELISA Test System compares well against the CDC diagnostic algorithm for chronic Chagas disease. The availability of this FDA-cleared assay will improve the chronic Chagas disease diagnosis. © 2022 American Society for Microbiology. All rights reserved.
Where have all the diagnostic morphological parasitologists gone?
- Bradbury, Richard, Sapp, Sarah, Potters, Idzi, Mathison, Blaine, Frean, John, Mewara, Abhishek, Sheorey, Harsha, Tamarozzi, Francesca, Couturier, Marc, Chiodini, Peter, Pritt, Bobbi
- Authors: Bradbury, Richard , Sapp, Sarah , Potters, Idzi , Mathison, Blaine , Frean, John , Mewara, Abhishek , Sheorey, Harsha , Tamarozzi, Francesca , Couturier, Marc , Chiodini, Peter , Pritt, Bobbi
- Date: 2022
- Type: Text , Journal article
- Relation: Journal of Clinical Microbiology Vol. 60, no. 11 (2022), p.
- Full Text:
- Reviewed:
- Description: Advances in laboratory techniques have revolutionized parasitology diagnostics over the past several decades. Widespread implementation of rapid antigen detection tests has greatly expanded access to tests for global parasitic threats such as malaria, while next-generation amplification and sequencing methods allow for sensitive and specific detection of human and animal parasites in complex specimen matrices. Recently, the introduction of multiplex panels for human gastrointestinal infections has enhanced the identification of common intestinal protozoa in feces along with bacterial and viral pathogens. Despite the benefits provided by novel diagnostics, increased reliance on nonmicroscopy-based methods has contributed to the progressive, widespread loss of morphology expertise for parasite identification. Loss of microscopy and morphology skills has the potential to negatively impact patient care, public health, and epidemiology. Molecular- and antigen-based diagnostics are not available for all parasites and may not be suitable for all specimen types and clinical settings. Furthermore, inadequate morphology experience may lead to missed and inaccurate diagnoses and erroneous descriptions of new human parasitic diseases. This commentary highlights the need to maintain expert microscopy and morphological parasitology diagnostic skills within the medical and scientific community. We proposed that light microscopy remains an important part of training and practice in the diagnosis of parasitic diseases and that efforts should be made to train the next generation of morphological parasitologists before the requisite knowledge, skills, and capacity for this complex and important mode of diagnosis are lost. In summary, the widespread, progressive loss of morphology expertise for parasite identification negatively impacts patient care, public health, and epidemiology. © 2022 American Society for Microbiology.
- Authors: Bradbury, Richard , Sapp, Sarah , Potters, Idzi , Mathison, Blaine , Frean, John , Mewara, Abhishek , Sheorey, Harsha , Tamarozzi, Francesca , Couturier, Marc , Chiodini, Peter , Pritt, Bobbi
- Date: 2022
- Type: Text , Journal article
- Relation: Journal of Clinical Microbiology Vol. 60, no. 11 (2022), p.
- Full Text:
- Reviewed:
- Description: Advances in laboratory techniques have revolutionized parasitology diagnostics over the past several decades. Widespread implementation of rapid antigen detection tests has greatly expanded access to tests for global parasitic threats such as malaria, while next-generation amplification and sequencing methods allow for sensitive and specific detection of human and animal parasites in complex specimen matrices. Recently, the introduction of multiplex panels for human gastrointestinal infections has enhanced the identification of common intestinal protozoa in feces along with bacterial and viral pathogens. Despite the benefits provided by novel diagnostics, increased reliance on nonmicroscopy-based methods has contributed to the progressive, widespread loss of morphology expertise for parasite identification. Loss of microscopy and morphology skills has the potential to negatively impact patient care, public health, and epidemiology. Molecular- and antigen-based diagnostics are not available for all parasites and may not be suitable for all specimen types and clinical settings. Furthermore, inadequate morphology experience may lead to missed and inaccurate diagnoses and erroneous descriptions of new human parasitic diseases. This commentary highlights the need to maintain expert microscopy and morphological parasitology diagnostic skills within the medical and scientific community. We proposed that light microscopy remains an important part of training and practice in the diagnosis of parasitic diseases and that efforts should be made to train the next generation of morphological parasitologists before the requisite knowledge, skills, and capacity for this complex and important mode of diagnosis are lost. In summary, the widespread, progressive loss of morphology expertise for parasite identification negatively impacts patient care, public health, and epidemiology. © 2022 American Society for Microbiology.
Draft genome sequences of four citrobacter isolates recovered from wild australian shorebirds
- Smith, Hannah, Bean, David, Pitchers, William, Valcanis, Mary, Clarke, Rohan, Loyn, Richard, Hassell, Chris, Greenhill, Andrew
- Authors: Smith, Hannah , Bean, David , Pitchers, William , Valcanis, Mary , Clarke, Rohan , Loyn, Richard , Hassell, Chris , Greenhill, Andrew
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Resource Announcements Vol. 10, no. 1 (2021), p.
- Full Text:
- Reviewed:
- Description: Citrobacter is a ubiquitous bacterial genus whose members inhabit a variety of niches. Some species are clinically important for both antimicrobial resistance (AMR) carriage and as the cause of nosocomial infections. Surveillance of Citrobacter species in the environment can provide indicators of the spread of AMR genes outside clinical spaces. In this study, we present draft genome sequences of four Citrobacter isolates obtained from three species of wild Australian shorebirds. Copyright © 2021 Smith et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
- Authors: Smith, Hannah , Bean, David , Pitchers, William , Valcanis, Mary , Clarke, Rohan , Loyn, Richard , Hassell, Chris , Greenhill, Andrew
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Resource Announcements Vol. 10, no. 1 (2021), p.
- Full Text:
- Reviewed:
- Description: Citrobacter is a ubiquitous bacterial genus whose members inhabit a variety of niches. Some species are clinically important for both antimicrobial resistance (AMR) carriage and as the cause of nosocomial infections. Surveillance of Citrobacter species in the environment can provide indicators of the spread of AMR genes outside clinical spaces. In this study, we present draft genome sequences of four Citrobacter isolates obtained from three species of wild Australian shorebirds. Copyright © 2021 Smith et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Inactivating effects of common laboratory disinfectants, fixatives, and temperatures on the eggs of soil transmitted helminths
- Kines, Kristine, Fox, Mark, Ndubuisi, MacKevin, Verocai, Guilherme, Cama, Vitaliano, Bradbury, Richard
- Authors: Kines, Kristine , Fox, Mark , Ndubuisi, MacKevin , Verocai, Guilherme , Cama, Vitaliano , Bradbury, Richard
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Spectrum Vol. 9, no. 3 (2021), p.
- Full Text:
- Reviewed:
- Description: Soil-transmitted helminths (STH) are important and widespread intestinal pathogens of humans and animals. It is presently unknown which inactivating procedures may be universally effective for safe transport, preservation, and disinfection of STH-contaminated specimens, and this lack of knowledge may expose laboratory staff to higher risk of laboratory-acquired infections (LAI’s). There are limited data on the efficacy of commonly used disinfectants and fecal fixatives for inactivating the eggs of STH. This work tested five disinfectants for surface cleanup, four storage temperature conditions, and six transport/storage fixatives, to inactivate eggs of three species of STH of animal origin (Ascaris suum “roundworm,” Trichuris vulpis “whipworm” and Ancylostoma caninum “hookworm”) as surrogates for human STH. Among disinfectants, exposure to 10% povidone-iodine for $5 min inactivated 100% of the three species tested, while 5 min exposure to 95% ethanol inactivated T. vulpis and A. caninum eggs. All of the fixatives tested had inactivation effects on A. caninum hookworm eggs within 24 h of exposure, except potassium dichromate, which required 48 h. 95% ethanol for $48 h inactivated eggs from all three STH species. Freezing at #220°C for $24 h inactivated eggs of T. vulpis and A. caninum, but only freezing at 280°C for $24 h inactivated .99% eggs, including A. suum. This work provides an evidence base for health and safety guidelines and mitigation strategies for the handling, storage, and disposal of stool samples containing STH eggs in laboratory, health care, childcare, or veterinary settings. IMPORTANCE This study systematically evaluates common laboratory disinfectants and storage conditions for their effectiveness in inactivating the infective stages of soil-transmitted helminths (STH). Animal-infecting proxy species were chosen to represent three major groups of STH that infect humans: roundworms, whipworms, and hookworms. Previously published work in this area typically focuses on a particular inactivation method, either for a single STH species, or on a subset of closely related species. Because prediagnostic fecal specimens must be regarded as potentially infectious with a mix of species, such information may be of limited utility in a working laboratory. We provide a straightforward summary of storage and disinfection methods that can achieve complete inactivation across a range of STH species, which represents a significant advance for clinical, veterinary and research laboratory biosafety. Copyright © 2021 Kines et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
- Authors: Kines, Kristine , Fox, Mark , Ndubuisi, MacKevin , Verocai, Guilherme , Cama, Vitaliano , Bradbury, Richard
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Spectrum Vol. 9, no. 3 (2021), p.
- Full Text:
- Reviewed:
- Description: Soil-transmitted helminths (STH) are important and widespread intestinal pathogens of humans and animals. It is presently unknown which inactivating procedures may be universally effective for safe transport, preservation, and disinfection of STH-contaminated specimens, and this lack of knowledge may expose laboratory staff to higher risk of laboratory-acquired infections (LAI’s). There are limited data on the efficacy of commonly used disinfectants and fecal fixatives for inactivating the eggs of STH. This work tested five disinfectants for surface cleanup, four storage temperature conditions, and six transport/storage fixatives, to inactivate eggs of three species of STH of animal origin (Ascaris suum “roundworm,” Trichuris vulpis “whipworm” and Ancylostoma caninum “hookworm”) as surrogates for human STH. Among disinfectants, exposure to 10% povidone-iodine for $5 min inactivated 100% of the three species tested, while 5 min exposure to 95% ethanol inactivated T. vulpis and A. caninum eggs. All of the fixatives tested had inactivation effects on A. caninum hookworm eggs within 24 h of exposure, except potassium dichromate, which required 48 h. 95% ethanol for $48 h inactivated eggs from all three STH species. Freezing at #220°C for $24 h inactivated eggs of T. vulpis and A. caninum, but only freezing at 280°C for $24 h inactivated .99% eggs, including A. suum. This work provides an evidence base for health and safety guidelines and mitigation strategies for the handling, storage, and disposal of stool samples containing STH eggs in laboratory, health care, childcare, or veterinary settings. IMPORTANCE This study systematically evaluates common laboratory disinfectants and storage conditions for their effectiveness in inactivating the infective stages of soil-transmitted helminths (STH). Animal-infecting proxy species were chosen to represent three major groups of STH that infect humans: roundworms, whipworms, and hookworms. Previously published work in this area typically focuses on a particular inactivation method, either for a single STH species, or on a subset of closely related species. Because prediagnostic fecal specimens must be regarded as potentially infectious with a mix of species, such information may be of limited utility in a working laboratory. We provide a straightforward summary of storage and disinfection methods that can achieve complete inactivation across a range of STH species, which represents a significant advance for clinical, veterinary and research laboratory biosafety. Copyright © 2021 Kines et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Medical parasitology taxonomy update, January 2018 to May 2020
- Mathison, Blaine, Bradbury, Richard, Pritt, Bobbi
- Authors: Mathison, Blaine , Bradbury, Richard , Pritt, Bobbi
- Date: 2021
- Type: Text , Journal article , Review
- Relation: Journal of Clinical Microbiology Vol. 59, no. 2 (2021), p.
- Full Text:
- Reviewed:
- Description: The taxonomy of parasites of medical and public health importance is rapidly evolving. This minireview provides an update of taxonomic revisions and additions in the field of medical parasitology from January 2018 to May 2020. Several established human parasites have been reassigned to different genera over the past 2 years, while a number of novel parasites of humans have been identified. A comprehensive summary of these changes is provided here, and Taenia suihominis is proposed as a replacement name for Taenia asiaticus Eom et al., which is a homonym of Taenia asiatica von Linstow. © 2021 American Society for Microbiology. All rights reserved. Erratum: Medical parasitology taxonomy update, January 2018 to May 2020 (Journal of Clinical Microbiology (2021) 59:2 (e01308-20) DOI: https://doi.org/10.1128/JCM.01308-20
- Authors: Mathison, Blaine , Bradbury, Richard , Pritt, Bobbi
- Date: 2021
- Type: Text , Journal article , Review
- Relation: Journal of Clinical Microbiology Vol. 59, no. 2 (2021), p.
- Full Text:
- Reviewed:
- Description: The taxonomy of parasites of medical and public health importance is rapidly evolving. This minireview provides an update of taxonomic revisions and additions in the field of medical parasitology from January 2018 to May 2020. Several established human parasites have been reassigned to different genera over the past 2 years, while a number of novel parasites of humans have been identified. A comprehensive summary of these changes is provided here, and Taenia suihominis is proposed as a replacement name for Taenia asiaticus Eom et al., which is a homonym of Taenia asiatica von Linstow. © 2021 American Society for Microbiology. All rights reserved. Erratum: Medical parasitology taxonomy update, January 2018 to May 2020 (Journal of Clinical Microbiology (2021) 59:2 (e01308-20) DOI: https://doi.org/10.1128/JCM.01308-20
Salmonella enterica serovar hvittingfoss in bar-tailed godwits (limosa lapponica) from Roebuck Bay, Northwestern Australia
- Smith, Hannah, Bean, David, Hawkey, Jane, Clarke, Rohan, Greenhill, Andrew
- Authors: Smith, Hannah , Bean, David , Hawkey, Jane , Clarke, Rohan , Greenhill, Andrew
- Date: 2020
- Type: Text , Journal article
- Relation: Applied and Environmental Microbiology Vol. 86, no. 19 (2020), p.
- Full Text:
- Reviewed:
- Description: Salmonella enterica serovar Hvittingfoss is an important foodborne serotype of Salmonella, being detected in many countries where surveillance is conducted. Outbreaks can occur, and there was a recent multistate foodborne outbreak in Australia. S. Hvittingfoss can be found in animal populations, though a definitive animal host has not been established. Six species of birds were sampled at Roebuck Bay, a designated Ramsar site in northwestern Australia, resulting in 326 cloacal swabs for bacterial culture. Among a single flock of 63 bar-tailed godwits (Limosa lapponica menzbieri) caught at Wader Spit, Roebuck Bay, in 2018, 17 (27%) were culture positive for Salmonella. All other birds were negative for Salmonella. The isolates were identified as Salmonella enterica serovar Hvittingfoss. Phylogenetic analysis revealed a close relationship between isolates collected from godwits and the S. Hvittingfoss strain responsible for a 2016 multistate foodborne outbreak originating from tainted cantaloupes (rock melons) in Australia. While it is not possible to determine how this strain of S. Hvittingfoss was introduced into the bar-tailed godwits, these findings show that wild Australian birds are capable of carrying Salmonella strains of public health importance. IMPORTANCE Salmonella is a zoonotic pathogen that causes gastroenteritis and other disease presentations in both humans and animals. Serovars of S. enterica commonly cause foodborne disease in Australia and globally. In 2016-2017, S. Hvittingfoss was responsible for an outbreak that resulted in 110 clinically confirmed human cases throughout Australia. The origin of the contamination that led to the outbreak was never definitively established. Here, we identify a migratory shorebird, the bar-tailed godwit, as an animal reservoir of S. Hvittingfoss. These birds were sampled in northwestern Australia during their nonbreeding period. The presence of a genetically similar S. Hvittingfoss strain circulating in a wild bird population, 2 years after the 2016-2017 outbreak and ~1,500 km from the suspected source of the outbreak, demonstrates a potentially unidentified environmental reservoir of S. Hvittingfoss. While the birds cannot be implicated in the outbreak that occurred 2 years prior, this study does demonstrate the potential role for wild birds in the transmission of this important foodborne pathogen. © 2020 American Society for Microbiology.
- Authors: Smith, Hannah , Bean, David , Hawkey, Jane , Clarke, Rohan , Greenhill, Andrew
- Date: 2020
- Type: Text , Journal article
- Relation: Applied and Environmental Microbiology Vol. 86, no. 19 (2020), p.
- Full Text:
- Reviewed:
- Description: Salmonella enterica serovar Hvittingfoss is an important foodborne serotype of Salmonella, being detected in many countries where surveillance is conducted. Outbreaks can occur, and there was a recent multistate foodborne outbreak in Australia. S. Hvittingfoss can be found in animal populations, though a definitive animal host has not been established. Six species of birds were sampled at Roebuck Bay, a designated Ramsar site in northwestern Australia, resulting in 326 cloacal swabs for bacterial culture. Among a single flock of 63 bar-tailed godwits (Limosa lapponica menzbieri) caught at Wader Spit, Roebuck Bay, in 2018, 17 (27%) were culture positive for Salmonella. All other birds were negative for Salmonella. The isolates were identified as Salmonella enterica serovar Hvittingfoss. Phylogenetic analysis revealed a close relationship between isolates collected from godwits and the S. Hvittingfoss strain responsible for a 2016 multistate foodborne outbreak originating from tainted cantaloupes (rock melons) in Australia. While it is not possible to determine how this strain of S. Hvittingfoss was introduced into the bar-tailed godwits, these findings show that wild Australian birds are capable of carrying Salmonella strains of public health importance. IMPORTANCE Salmonella is a zoonotic pathogen that causes gastroenteritis and other disease presentations in both humans and animals. Serovars of S. enterica commonly cause foodborne disease in Australia and globally. In 2016-2017, S. Hvittingfoss was responsible for an outbreak that resulted in 110 clinically confirmed human cases throughout Australia. The origin of the contamination that led to the outbreak was never definitively established. Here, we identify a migratory shorebird, the bar-tailed godwit, as an animal reservoir of S. Hvittingfoss. These birds were sampled in northwestern Australia during their nonbreeding period. The presence of a genetically similar S. Hvittingfoss strain circulating in a wild bird population, 2 years after the 2016-2017 outbreak and ~1,500 km from the suspected source of the outbreak, demonstrates a potentially unidentified environmental reservoir of S. Hvittingfoss. While the birds cannot be implicated in the outbreak that occurred 2 years prior, this study does demonstrate the potential role for wild birds in the transmission of this important foodborne pathogen. © 2020 American Society for Microbiology.
Draft genome sequence of Staphylococcus cohnii subsp. urealyticus isolated from a healthy dog
- Bean, David, Wigmore, Sarah, Wareham, David
- Authors: Bean, David , Wigmore, Sarah , Wareham, David
- Date: 2017
- Type: Text , Journal article
- Relation: Genome Announcements Vol. 5, no. 7 (2017), p. 1-2
- Full Text:
- Reviewed:
- Description: Staphylococcus cohnii subsp. urealyticus strain SW120 was isolated from the ear swab of a healthy dog. The isolate is resistant to methicillin and fusidic acid. The SW120 draft genome is 2,805,064 bp and contains 2,667 coding sequences, including 58 tRNAs and nine complete rRNA coding regions. © 2017 Bean et al.
- Authors: Bean, David , Wigmore, Sarah , Wareham, David
- Date: 2017
- Type: Text , Journal article
- Relation: Genome Announcements Vol. 5, no. 7 (2017), p. 1-2
- Full Text:
- Reviewed:
- Description: Staphylococcus cohnii subsp. urealyticus strain SW120 was isolated from the ear swab of a healthy dog. The isolate is resistant to methicillin and fusidic acid. The SW120 draft genome is 2,805,064 bp and contains 2,667 coding sequences, including 58 tRNAs and nine complete rRNA coding regions. © 2017 Bean et al.
Groundwater seeps facilitate exposure to Burkholderia pseudomallei
- Baker, Anthony, Tahani, Donald, Gardiner, Christopher, Bristow, Keith, Greenhill, Andrew, Warner, Jeffrey
- Authors: Baker, Anthony , Tahani, Donald , Gardiner, Christopher , Bristow, Keith , Greenhill, Andrew , Warner, Jeffrey
- Date: 2011
- Type: Text , Journal article
- Relation: Applied and Environmental Microbiology Vol. 77, no. 20 (2011), p. 7243-7246
- Full Text:
- Reviewed:
- Description: Burkholderia pseudomallei is a saprophytic bacterium which is the causative agent of melioidosis, a common cause of fatal bacterial pneumonia and sepsis in the tropics. The incidence of melioidosis is clustered spatially and temporally and is heavily linked to rainfall and extreme weather events. Clinical case clustering has recently been reported in Townsville, Australia, and has implicated Castle Hill, a granite monolith in the city center, as a potential reservoir of infection. Topsoil and water from seasonal groundwater seeps were collected around the base of Castle Hill and analyzed by quantitative real-time PCR targeting the type III secretion system genes for the presence of B. pseudomallei. The organism was identified in 65% (95% confidence interval [CI], 49.5 to 80.4) of soil samples (n =40) and 92.5% (95% CI, 83.9 to 100) of seasonal groundwater samples (n =40). Further sampling of water collected from roads and gutters in nearby residential areas after an intense rainfall event found that 88.2% (95% CI, 72.9 to 100) of samples (n =16) contained viable B. pseudomallei at concentrations up to 113 CFU/ml. Comparison of isolates using multilocus sequence typing demonstrated clinical matches and close associations between environmental isolates and isolates derived from clinical samples from patients in Townsville. This study demonstrated that waterborne B. pseudomallei from groundwater seeps around Castle Hill may facilitate exposure to B. pseudomallei and contribute to the clinical clustering at this site. Access to this type of information will advise the development and implementation of public health measures to reduce the incidence of melioidosis. © 2011, American Society for Microbiology.
- Authors: Baker, Anthony , Tahani, Donald , Gardiner, Christopher , Bristow, Keith , Greenhill, Andrew , Warner, Jeffrey
- Date: 2011
- Type: Text , Journal article
- Relation: Applied and Environmental Microbiology Vol. 77, no. 20 (2011), p. 7243-7246
- Full Text:
- Reviewed:
- Description: Burkholderia pseudomallei is a saprophytic bacterium which is the causative agent of melioidosis, a common cause of fatal bacterial pneumonia and sepsis in the tropics. The incidence of melioidosis is clustered spatially and temporally and is heavily linked to rainfall and extreme weather events. Clinical case clustering has recently been reported in Townsville, Australia, and has implicated Castle Hill, a granite monolith in the city center, as a potential reservoir of infection. Topsoil and water from seasonal groundwater seeps were collected around the base of Castle Hill and analyzed by quantitative real-time PCR targeting the type III secretion system genes for the presence of B. pseudomallei. The organism was identified in 65% (95% confidence interval [CI], 49.5 to 80.4) of soil samples (n =40) and 92.5% (95% CI, 83.9 to 100) of seasonal groundwater samples (n =40). Further sampling of water collected from roads and gutters in nearby residential areas after an intense rainfall event found that 88.2% (95% CI, 72.9 to 100) of samples (n =16) contained viable B. pseudomallei at concentrations up to 113 CFU/ml. Comparison of isolates using multilocus sequence typing demonstrated clinical matches and close associations between environmental isolates and isolates derived from clinical samples from patients in Townsville. This study demonstrated that waterborne B. pseudomallei from groundwater seeps around Castle Hill may facilitate exposure to B. pseudomallei and contribute to the clinical clustering at this site. Access to this type of information will advise the development and implementation of public health measures to reduce the incidence of melioidosis. © 2011, American Society for Microbiology.
Medical Parasitology Taxonomy Update, June 2020-June 2022
- Mathison, Blaine, Bradbury, Richard, Pritt, Bobbi
- Authors: Mathison, Blaine , Bradbury, Richard , Pritt, Bobbi
- Date: 2023
- Type: Text , Journal article
- Relation: Journal of Clinical Microbiology Vol. 61, no. 5 (2023), p. e0028622-e0028622
- Full Text: false
- Reviewed:
- Description: The taxonomy of medically important parasites continues to evolve. This minireview provides an update of additions and updates in the field of human parasitology from June 2020 through June 2022. A list of previously reported nomenclatural changes that have not been broadly adapted by the medical community is also included.
- Carolan, Louise, Rockman, Steve, Borg, Kathryn, Guarnaccia, Teagan, Reading, Patrick, Mosse, Jennifer, Kelso, Anne, Barr, Ian, Laurie, Karen
- Authors: Carolan, Louise , Rockman, Steve , Borg, Kathryn , Guarnaccia, Teagan , Reading, Patrick , Mosse, Jennifer , Kelso, Anne , Barr, Ian , Laurie, Karen
- Date: 2016
- Type: Text , Journal article
- Relation: Journal of Virology Vol. 90, no. 6 (2016), p. 2838-2848
- Full Text: false
- Reviewed:
- Description: The burden of infection with seasonal influenza viruses is significant. Each year is typically characterized by the dominance of one (sub)type or lineage of influenza A or B virus, respectively. The incidence of disease varies annually, and while this may be attributed to a particular virus strain or subtype, the impacts of prior immunity, population differences, and variations in clinical assessment are also important. To improve our understanding of the impacts of seasonal influenza viruses, we directly compared clinical symptoms, virus shedding, and expression of cytokines, chemokines, and immune mediators in the upper respiratory tract (URT) of ferrets infected with contemporary A(H1N1)pdm09, A(H3N2), or influenza B virus. Gene expression in the lower respiratory tract (LRT) was also assessed. Clinical symptoms were minimal. Overall cytokine/chemokine profiles in the URT were consistent in pattern and magnitude between animals infected with influenza A and B viruses, and peak expression levels of interleukin-1α (IL-1α), IL-1β, IL-6, IL-12p40, alpha interferon (IFN-α), IFN-β, and tumor necrosis factor alpha (TNF-α) mRNAs correlated with peak levels of viral shedding. MCP1 and IFN-γ were expressed after the virus peak. Granzymes A and B and IL-10 reached peak expression as the virus was cleared and seroconversion was detected. Cytokine/chemokine gene expression in the LRT following A(H1N1)pdm09 virus infection reflected the observations seen for the URT but was delayed 2 or 3 days, as was virus replication. These data indicate that disease severities and localized immune responses following infection with seasonal influenza A and B viruses are similar, suggesting that other factors are likely to modulate the incidence and impact of seasonal influenza. © 2016, American Society for Microbiology.
- «
- ‹
- 1
- ›
- »