Exploring novel features and decision rules to identify cardiovascular autonomic neuropathy using a hybrid of wrapper-filter based feature selection
- Huda, Shamsul, Jelinek, Herbert, Ray, Biplob, Stranieri, Andrew, Yearwood, John
- Authors: Huda, Shamsul , Jelinek, Herbert , Ray, Biplob , Stranieri, Andrew , Yearwood, John
- Date: 2010
- Type: Text , Conference paper
- Relation: Paper presented at the 2010 6th International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2010 p. 297-302
- Full Text:
- Reviewed:
- Description: Cardiovascular autonomic neuropathy (CAN) is one of the important causes of mortality among diabetes patients. Statistics shows that more than 22% of people with type 2 diabetes mellitus suffer from CAN and which in turn leads to cardiovascular disease (heart attack, stroke). Therefore early detection of CAN could reduce the mortality. Traditional method for detection of CAN uses Ewing's algorithm where five noninvasive cardiovascular tests are used. Often for clinician, it is difficult to collect data from for the Ewing Battery patients due to onerous test conditions. In this paper, we propose a hybrid of wrapper-filter approach to find novel features from patients' ECG records and then generate decision rules for the new features for easier detection of CAN. In the proposed feature selection, a hybrid of filter (Maximum Relevance, MR) and wrapper (Artificial Neural Net Input Gain Measurement Approximation ANNIGMA) approaches (MR-ANNIGMA) would be used. The combined heuristics in the hybrid MRANNIGMA takes the advantages of the complementary properties of the both filter and wrapper heuristics and can find significant features. The selected features set are used to generate a new set of rules for detection of CAN. Experiments on real patient records shows that proposed method finds a smaller set of features for detection of CAN than traditional method which are clinically significant and could lead to an easier way to diagnose CAN. © 2010 IEEE.
- Authors: Huda, Shamsul , Jelinek, Herbert , Ray, Biplob , Stranieri, Andrew , Yearwood, John
- Date: 2010
- Type: Text , Conference paper
- Relation: Paper presented at the 2010 6th International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2010 p. 297-302
- Full Text:
- Reviewed:
- Description: Cardiovascular autonomic neuropathy (CAN) is one of the important causes of mortality among diabetes patients. Statistics shows that more than 22% of people with type 2 diabetes mellitus suffer from CAN and which in turn leads to cardiovascular disease (heart attack, stroke). Therefore early detection of CAN could reduce the mortality. Traditional method for detection of CAN uses Ewing's algorithm where five noninvasive cardiovascular tests are used. Often for clinician, it is difficult to collect data from for the Ewing Battery patients due to onerous test conditions. In this paper, we propose a hybrid of wrapper-filter approach to find novel features from patients' ECG records and then generate decision rules for the new features for easier detection of CAN. In the proposed feature selection, a hybrid of filter (Maximum Relevance, MR) and wrapper (Artificial Neural Net Input Gain Measurement Approximation ANNIGMA) approaches (MR-ANNIGMA) would be used. The combined heuristics in the hybrid MRANNIGMA takes the advantages of the complementary properties of the both filter and wrapper heuristics and can find significant features. The selected features set are used to generate a new set of rules for detection of CAN. Experiments on real patient records shows that proposed method finds a smaller set of features for detection of CAN than traditional method which are clinically significant and could lead to an easier way to diagnose CAN. © 2010 IEEE.
Hybrid wrapper-filter approaches for input feature selection using maximum relevance and Artificial Neural Network Input Gain Measurement Approximation (ANNIGMA)
- Huda, Shamsul, Yearwood, John, Stranieri, Andrew
- Authors: Huda, Shamsul , Yearwood, John , Stranieri, Andrew
- Date: 2010
- Type: Text , Conference proceedings
- Full Text:
- Description: Feature selection is an important research problem in machine learning and data mining applications. This paper proposes a hybrid wrapper and filter feature selection algorithm by introducing the filter's feature ranking score in the wrapper stage to speed up the search process for wrapper and thereby finding a more compact feature subset. The approach hybridizes a Mutual Information (MI) based Maximum Relevance (MR) filter ranking heuristic with an Artificial Neural Network (ANN) based wrapper approach where Artificial Neural Network Input Gain Measurement Approximation (ANNIGMA) has been combined with MR (MR-ANNIGMA) to guide the search process in the wrapper. The novelty of our approach is that we use hybrid of wrapper and filter methods that combines filter's ranking score with the wrapper-heuristic's score to take advantages of both filter and wrapper heuristics. Performance of the proposed MRANNIGMA has been verified using bench mark data sets and compared to both independent filter and wrapper based approaches. Experimental results show that MR-ANNIGMA achieves more compact feature sets and higher accuracies than both filter and wrapper approaches alone. © 2010 IEEE.
- Authors: Huda, Shamsul , Yearwood, John , Stranieri, Andrew
- Date: 2010
- Type: Text , Conference proceedings
- Full Text:
- Description: Feature selection is an important research problem in machine learning and data mining applications. This paper proposes a hybrid wrapper and filter feature selection algorithm by introducing the filter's feature ranking score in the wrapper stage to speed up the search process for wrapper and thereby finding a more compact feature subset. The approach hybridizes a Mutual Information (MI) based Maximum Relevance (MR) filter ranking heuristic with an Artificial Neural Network (ANN) based wrapper approach where Artificial Neural Network Input Gain Measurement Approximation (ANNIGMA) has been combined with MR (MR-ANNIGMA) to guide the search process in the wrapper. The novelty of our approach is that we use hybrid of wrapper and filter methods that combines filter's ranking score with the wrapper-heuristic's score to take advantages of both filter and wrapper heuristics. Performance of the proposed MRANNIGMA has been verified using bench mark data sets and compared to both independent filter and wrapper based approaches. Experimental results show that MR-ANNIGMA achieves more compact feature sets and higher accuracies than both filter and wrapper approaches alone. © 2010 IEEE.
An approach for Ewing test selection to support the clinical assessment of cardiac autonomic neuropathy
- Stranieri, Andrew, Abawajy, Jemal, Kelarev, Andrei, Huda, Shamsul, Chowdhury, Morshed, Jelinek, Herbert
- Authors: Stranieri, Andrew , Abawajy, Jemal , Kelarev, Andrei , Huda, Shamsul , Chowdhury, Morshed , Jelinek, Herbert
- Date: 2013
- Type: Text , Journal article
- Relation: Artificial Intelligence in Medicine Vol. 58, no. 3 (2013), p. 185-193
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- Description: Objective: This article addresses the problem of determining optimal sequences of tests for the clinical assessment of cardiac autonomic neuropathy (CAN) We investigate the accuracy of using only one of the recommended Ewing tests to classify CAN and the additional accuracy obtained by adding the remaining tests of the Ewing battery This is important as not all five Ewing tests can always be applied in each situation in practice Methods and material: We used new and unique database of the diabetes screening research initiative project, which is more than ten times larger than the data set used by Ewing in his original investigation of CAN We utilized decision trees and the optimal decision path finder (ODPF) procedure for identifying optimal sequences of tests Results: We present experimental results on the accuracy of using each one of the recommended Ewing tests to classify CAN and the additional accuracy that can be achieved by adding the remaining tests of the Ewing battery We found the best sequences of tests for cost-function equal to the number of tests The accuracies achieved by the initial segments of the optimal sequences for 2, 3 and 4 categories of CAN are 80.80, 91.33, 93.97 and 94.14, and respectively, 79.86, 89.29, 91.16 and 91.76, and 78.90, 86.21, 88.15 and 88.93 They show significant improvement compared to the sequence considered previously in the literature and the mathematical expectations of the accuracies of a random sequence of tests The complete outcomes obtained for all subsets of the Ewing features are required for determining optimal sequences of tests for any cost-function with the use of the ODPF procedure We have also found two most significant additional features that can increase the accuracy when some of the Ewing attributes cannot be obtained Conclusions: The outcomes obtained can be used to determine the optimal sequences of tests for each individual cost-function by following the ODPF procedure The results show that the best single Ewing test for diagnosing CAN is the deep breathing heart rate variation test Optimal sequences found for the cost-function equal to the number of tests guarantee that the best accuracy is achieved after any number of tests and provide an improvement in comparison with the previous ordering of tests or a random sequence © 2013 Elsevier B.V.
- Description: 2003011130
- Authors: Stranieri, Andrew , Abawajy, Jemal , Kelarev, Andrei , Huda, Shamsul , Chowdhury, Morshed , Jelinek, Herbert
- Date: 2013
- Type: Text , Journal article
- Relation: Artificial Intelligence in Medicine Vol. 58, no. 3 (2013), p. 185-193
- Full Text:
- Reviewed:
- Description: Objective: This article addresses the problem of determining optimal sequences of tests for the clinical assessment of cardiac autonomic neuropathy (CAN) We investigate the accuracy of using only one of the recommended Ewing tests to classify CAN and the additional accuracy obtained by adding the remaining tests of the Ewing battery This is important as not all five Ewing tests can always be applied in each situation in practice Methods and material: We used new and unique database of the diabetes screening research initiative project, which is more than ten times larger than the data set used by Ewing in his original investigation of CAN We utilized decision trees and the optimal decision path finder (ODPF) procedure for identifying optimal sequences of tests Results: We present experimental results on the accuracy of using each one of the recommended Ewing tests to classify CAN and the additional accuracy that can be achieved by adding the remaining tests of the Ewing battery We found the best sequences of tests for cost-function equal to the number of tests The accuracies achieved by the initial segments of the optimal sequences for 2, 3 and 4 categories of CAN are 80.80, 91.33, 93.97 and 94.14, and respectively, 79.86, 89.29, 91.16 and 91.76, and 78.90, 86.21, 88.15 and 88.93 They show significant improvement compared to the sequence considered previously in the literature and the mathematical expectations of the accuracies of a random sequence of tests The complete outcomes obtained for all subsets of the Ewing features are required for determining optimal sequences of tests for any cost-function with the use of the ODPF procedure We have also found two most significant additional features that can increase the accuracy when some of the Ewing attributes cannot be obtained Conclusions: The outcomes obtained can be used to determine the optimal sequences of tests for each individual cost-function by following the ODPF procedure The results show that the best single Ewing test for diagnosing CAN is the deep breathing heart rate variation test Optimal sequences found for the cost-function equal to the number of tests guarantee that the best accuracy is achieved after any number of tests and provide an improvement in comparison with the previous ordering of tests or a random sequence © 2013 Elsevier B.V.
- Description: 2003011130
Automatic sleep stage identification: difficulties and possible solutions
- Sukhorukova, Nadezda, Stranieri, Andrew, Ofoghi, Bahadorreza, Vamplew, Peter, Saleem, Muhammad Saad, Ma, Liping, Ugon, Adrien, Ugon, Julien, Muecke, Nial, Amiel, Hélène, Philippe, Carole, Bani-Mustafa, Ahmed, Huda, Shamsul, Bertoli, Marcello, Levy, P, Ganascia, J.G
- Authors: Sukhorukova, Nadezda , Stranieri, Andrew , Ofoghi, Bahadorreza , Vamplew, Peter , Saleem, Muhammad Saad , Ma, Liping , Ugon, Adrien , Ugon, Julien , Muecke, Nial , Amiel, Hélène , Philippe, Carole , Bani-Mustafa, Ahmed , Huda, Shamsul , Bertoli, Marcello , Levy, P , Ganascia, J.G
- Date: 2010
- Type: Text , Conference proceedings
- Full Text:
- Description: The diagnosis of many sleep disorders is a labour intensive task that involves the specialised interpretation of numerous signals including brain wave, breath and heart rate captured in overnight polysomnogram sessions. The automation of diagnoses is challenging for data mining algorithms because the data sets are extremely large and noisy, the signals are complex and specialist's analyses vary. This work reports on the adaptation of approaches from four fields; neural networks, mathematical optimisation, financial forecasting and frequency domain analysis to the problem of automatically determing a patient's stage of sleep. Results, though preliminary, are promising and indicate that combined approaches may prove more fruitful than the reliance on a approach.
- Authors: Sukhorukova, Nadezda , Stranieri, Andrew , Ofoghi, Bahadorreza , Vamplew, Peter , Saleem, Muhammad Saad , Ma, Liping , Ugon, Adrien , Ugon, Julien , Muecke, Nial , Amiel, Hélène , Philippe, Carole , Bani-Mustafa, Ahmed , Huda, Shamsul , Bertoli, Marcello , Levy, P , Ganascia, J.G
- Date: 2010
- Type: Text , Conference proceedings
- Full Text:
- Description: The diagnosis of many sleep disorders is a labour intensive task that involves the specialised interpretation of numerous signals including brain wave, breath and heart rate captured in overnight polysomnogram sessions. The automation of diagnoses is challenging for data mining algorithms because the data sets are extremely large and noisy, the signals are complex and specialist's analyses vary. This work reports on the adaptation of approaches from four fields; neural networks, mathematical optimisation, financial forecasting and frequency domain analysis to the problem of automatically determing a patient's stage of sleep. Results, though preliminary, are promising and indicate that combined approaches may prove more fruitful than the reliance on a approach.
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