Exploring novel features and decision rules to identify cardiovascular autonomic neuropathy using a hybrid of wrapper-filter based feature selection
- Huda, Shamsul, Jelinek, Herbert, Ray, Biplob, Stranieri, Andrew, Yearwood, John
- Authors: Huda, Shamsul , Jelinek, Herbert , Ray, Biplob , Stranieri, Andrew , Yearwood, John
- Date: 2010
- Type: Text , Conference paper
- Relation: Paper presented at the 2010 6th International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2010 p. 297-302
- Full Text:
- Reviewed:
- Description: Cardiovascular autonomic neuropathy (CAN) is one of the important causes of mortality among diabetes patients. Statistics shows that more than 22% of people with type 2 diabetes mellitus suffer from CAN and which in turn leads to cardiovascular disease (heart attack, stroke). Therefore early detection of CAN could reduce the mortality. Traditional method for detection of CAN uses Ewing's algorithm where five noninvasive cardiovascular tests are used. Often for clinician, it is difficult to collect data from for the Ewing Battery patients due to onerous test conditions. In this paper, we propose a hybrid of wrapper-filter approach to find novel features from patients' ECG records and then generate decision rules for the new features for easier detection of CAN. In the proposed feature selection, a hybrid of filter (Maximum Relevance, MR) and wrapper (Artificial Neural Net Input Gain Measurement Approximation ANNIGMA) approaches (MR-ANNIGMA) would be used. The combined heuristics in the hybrid MRANNIGMA takes the advantages of the complementary properties of the both filter and wrapper heuristics and can find significant features. The selected features set are used to generate a new set of rules for detection of CAN. Experiments on real patient records shows that proposed method finds a smaller set of features for detection of CAN than traditional method which are clinically significant and could lead to an easier way to diagnose CAN. © 2010 IEEE.
- Authors: Huda, Shamsul , Jelinek, Herbert , Ray, Biplob , Stranieri, Andrew , Yearwood, John
- Date: 2010
- Type: Text , Conference paper
- Relation: Paper presented at the 2010 6th International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2010 p. 297-302
- Full Text:
- Reviewed:
- Description: Cardiovascular autonomic neuropathy (CAN) is one of the important causes of mortality among diabetes patients. Statistics shows that more than 22% of people with type 2 diabetes mellitus suffer from CAN and which in turn leads to cardiovascular disease (heart attack, stroke). Therefore early detection of CAN could reduce the mortality. Traditional method for detection of CAN uses Ewing's algorithm where five noninvasive cardiovascular tests are used. Often for clinician, it is difficult to collect data from for the Ewing Battery patients due to onerous test conditions. In this paper, we propose a hybrid of wrapper-filter approach to find novel features from patients' ECG records and then generate decision rules for the new features for easier detection of CAN. In the proposed feature selection, a hybrid of filter (Maximum Relevance, MR) and wrapper (Artificial Neural Net Input Gain Measurement Approximation ANNIGMA) approaches (MR-ANNIGMA) would be used. The combined heuristics in the hybrid MRANNIGMA takes the advantages of the complementary properties of the both filter and wrapper heuristics and can find significant features. The selected features set are used to generate a new set of rules for detection of CAN. Experiments on real patient records shows that proposed method finds a smaller set of features for detection of CAN than traditional method which are clinically significant and could lead to an easier way to diagnose CAN. © 2010 IEEE.
A classification algorithm that derives weighted sum scores for insight into disease
- Quinn, Anthony, Stranieri, Andrew, Yearwood, John, Hafen, Gaudenz
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John , Hafen, Gaudenz
- Date: 2009
- Type: Text , Conference paper
- Relation: Paper presented at Third Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2009), Wellington, New Zealand : Vol. 97, p. 13-17
- Full Text:
- Description: Data mining is often performed with datasets associated with diseases in order to increase insights that can ultimately lead to improved prevention or treatment. Classification algorithms can achieve high levels of predictive accuracy but have limited application for facilitating the insight that leads to deeper understanding of aspects of the disease. This is because the representation of knowledge that arises from classification algorithms is too opaque, too complex or too sparse to facilitate insight. Clustering, association and visualisation approaches enable greater scope for clinicians to be engaged in a way that leads to insight, however predictive accuracy is compromised or non-existent. This research investigates the practical applications of Automated Weighted Sum, (AWSum), a classification algorithm that provides accuracy comparable to other techniques whilst providing some insight into the data. This is achieved by calculating a weight for each feature value that represents its influence on the class value. Clinicians are very familiar with weighted sum scoring scales so the internal representation is intuitive and easily understood. This paper presents results from the use of the AWSum approach with data from patients suffering from Cystic Fibrosis.
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John , Hafen, Gaudenz
- Date: 2009
- Type: Text , Conference paper
- Relation: Paper presented at Third Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2009), Wellington, New Zealand : Vol. 97, p. 13-17
- Full Text:
- Description: Data mining is often performed with datasets associated with diseases in order to increase insights that can ultimately lead to improved prevention or treatment. Classification algorithms can achieve high levels of predictive accuracy but have limited application for facilitating the insight that leads to deeper understanding of aspects of the disease. This is because the representation of knowledge that arises from classification algorithms is too opaque, too complex or too sparse to facilitate insight. Clustering, association and visualisation approaches enable greater scope for clinicians to be engaged in a way that leads to insight, however predictive accuracy is compromised or non-existent. This research investigates the practical applications of Automated Weighted Sum, (AWSum), a classification algorithm that provides accuracy comparable to other techniques whilst providing some insight into the data. This is achieved by calculating a weight for each feature value that represents its influence on the class value. Clinicians are very familiar with weighted sum scoring scales so the internal representation is intuitive and easily understood. This paper presents results from the use of the AWSum approach with data from patients suffering from Cystic Fibrosis.
A web-based Narrative construction environment
- Yearwood, John, Stranieri, Andrew, Osman, Deanna
- Authors: Yearwood, John , Stranieri, Andrew , Osman, Deanna
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at NILE 2008: 5th International Conference on Narrative and Interactive Learning Environments, Edinburgh, Scotland : 6th-8th August 2008 p. 78-81
- Full Text:
- Description: This paper describes a web-based environment for constructing narrative from story snippets contributed by a community of interest. The underlying model uses an argument based structure to infer the next event in the narrative sequence. The approach makes use of both events and higher level story elements derived from Polti’s dramatic situations. Dramatic situations used are consistent with a theme, and events are generally constrained by the dramatic situation. The narrative generated is a function of the event history, the dramatic situations chosen and the plausible inferences about next events that are contributed by a community of interest in the theme. At this stage, a player’s actions are simulated using a random selection from a set and the implementation of a nonsense filter. Example outputs from the system are provided and discussed.
- Description: 2003006499
- Authors: Yearwood, John , Stranieri, Andrew , Osman, Deanna
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at NILE 2008: 5th International Conference on Narrative and Interactive Learning Environments, Edinburgh, Scotland : 6th-8th August 2008 p. 78-81
- Full Text:
- Description: This paper describes a web-based environment for constructing narrative from story snippets contributed by a community of interest. The underlying model uses an argument based structure to infer the next event in the narrative sequence. The approach makes use of both events and higher level story elements derived from Polti’s dramatic situations. Dramatic situations used are consistent with a theme, and events are generally constrained by the dramatic situation. The narrative generated is a function of the event history, the dramatic situations chosen and the plausible inferences about next events that are contributed by a community of interest in the theme. At this stage, a player’s actions are simulated using a random selection from a set and the implementation of a nonsense filter. Example outputs from the system are provided and discussed.
- Description: 2003006499
AWSum - applying data mining in a health care scenario
- Quinn, Anthony, Jelinek, Herbert, Stranieri, Andrew, Yearwood, John
- Authors: Quinn, Anthony , Jelinek, Herbert , Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2008, Sydney, New South Wales : 15th-18th December 2008 p. 291-296
- Full Text:
- Description: This paper investigates the application of a new data mining algorithm called Automated Weighted Sum, (AWSum), to diabetes screening data to explore its use in providing researchers with new insight into the disease and secondarily to explore the potential the algorithm has for the generation of prognostic models for clinical use. There are many data mining classifiers that produce high levels of predictive accuracy but their application to health research and clinical applications is limited because they are complex, produce results that are difficult to interpret and are difficult to integrate with current knowledge and practises. This is because most focus on accuracy at the expense of informing the user as to the influences that lead to their classification results. By providing this information on influences a researcher can be pointed to new potentially interesting avenues for investigation. AWSum measures influence by calculating a weight for each feature value that represents its influence on a class value relative to other class values. The results produced, although on limited data, indicated the approach has potential uses for research and has some characteristics that may be useful in the future development of prognostic models.
- Description: 2003006660
- Authors: Quinn, Anthony , Jelinek, Herbert , Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2008, Sydney, New South Wales : 15th-18th December 2008 p. 291-296
- Full Text:
- Description: This paper investigates the application of a new data mining algorithm called Automated Weighted Sum, (AWSum), to diabetes screening data to explore its use in providing researchers with new insight into the disease and secondarily to explore the potential the algorithm has for the generation of prognostic models for clinical use. There are many data mining classifiers that produce high levels of predictive accuracy but their application to health research and clinical applications is limited because they are complex, produce results that are difficult to interpret and are difficult to integrate with current knowledge and practises. This is because most focus on accuracy at the expense of informing the user as to the influences that lead to their classification results. By providing this information on influences a researcher can be pointed to new potentially interesting avenues for investigation. AWSum measures influence by calculating a weight for each feature value that represents its influence on a class value relative to other class values. The results produced, although on limited data, indicated the approach has potential uses for research and has some characteristics that may be useful in the future development of prognostic models.
- Description: 2003006660
Dramatic level analysis for interactive narrative
- Macfadyen, Alyx, Stranieri, Andrew, Yearwood, John
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at NILE 2008: 5th International Conference on Narrative and Interactive Learning Environments, Edinburgh, Scotland : 6th-8th August 2008 p. 17-22
- Full Text:
- Description: In interactive 3D narratives, a user’s narrative emerges through interactions with the system and embodied agencies (characters) mediated through the 3D environment. We present a methodology that identifies and measures four factors in interactive narrative where agency is present. We describe a technique for measuring drama, agency and engagement and compare the centrality of a designed interactive narrative with the emergent participatory narrative. This methodology has application as an analytic device for any interactive narrative where agency is fundamental. The adoption of the FrameNet semantic resource and the interpretation of interaction in narrative, situate this work in the domain of 3D interactive narratives, mixed and augmented realities and polymorphic narratives that cross forms of media.
- Description: 2003006540
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at NILE 2008: 5th International Conference on Narrative and Interactive Learning Environments, Edinburgh, Scotland : 6th-8th August 2008 p. 17-22
- Full Text:
- Description: In interactive 3D narratives, a user’s narrative emerges through interactions with the system and embodied agencies (characters) mediated through the 3D environment. We present a methodology that identifies and measures four factors in interactive narrative where agency is present. We describe a technique for measuring drama, agency and engagement and compare the centrality of a designed interactive narrative with the emergent participatory narrative. This methodology has application as an analytic device for any interactive narrative where agency is fundamental. The adoption of the FrameNet semantic resource and the interpretation of interaction in narrative, situate this work in the domain of 3D interactive narratives, mixed and augmented realities and polymorphic narratives that cross forms of media.
- Description: 2003006540
Toward computer mediated elicitation of a community's core values for sustainable decision making
- Stranieri, Andrew, Yearwood, John, Afshar, Faye
- Authors: Stranieri, Andrew , Yearwood, John , Afshar, Faye
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at 11th Annual Australian Conference on Knowledge Management and Intelligent Decision Support ACKMIDS 2008 p. 1-14
- Full Text:
- Reviewed:
- Authors: Stranieri, Andrew , Yearwood, John , Afshar, Faye
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at 11th Annual Australian Conference on Knowledge Management and Intelligent Decision Support ACKMIDS 2008 p. 1-14
- Full Text:
- Reviewed:
Classification for accuracy and insight : A weighted sum approach
- Quinn, Anthony, Stranieri, Andrew, Yearwood, John
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John
- Date: 2007
- Type: Text , Conference paper
- Relation: Paper presented at Sixth Australasian Data Mining Conference, AusDM 2007, Gold Coast, Queensland, Victoria : 3rd-4th December 2007 p. 203-208
- Full Text:
- Description: This research presents a classifier that aims to provide insight into a dataset in addition to achieving classification accuracies comparable to other algorithms. The classifier called, Automated Weighted Sum (AWSum) uses a weighted sum approach where feature values are assigned weights that are summed and compared to a threshold in order to classify an example. Though naive, this approach is scalable, achieves accurate classifications on standard datasets and also provides a degree of insight. By insight we mean that the technique provides an appreciation of the influence a feature value has on class values, relative to each other. AWSum provides a focus on the feature value space that allows the technique to identify feature values and combinations of feature values that are sensitive and important for a classification. This is particularly useful in fields such as medicine where this sort of micro-focus and understanding is critical in classification.
- Description: 2003005504
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John
- Date: 2007
- Type: Text , Conference paper
- Relation: Paper presented at Sixth Australasian Data Mining Conference, AusDM 2007, Gold Coast, Queensland, Victoria : 3rd-4th December 2007 p. 203-208
- Full Text:
- Description: This research presents a classifier that aims to provide insight into a dataset in addition to achieving classification accuracies comparable to other algorithms. The classifier called, Automated Weighted Sum (AWSum) uses a weighted sum approach where feature values are assigned weights that are summed and compared to a threshold in order to classify an example. Though naive, this approach is scalable, achieves accurate classifications on standard datasets and also provides a degree of insight. By insight we mean that the technique provides an appreciation of the influence a feature value has on class values, relative to each other. AWSum provides a focus on the feature value space that allows the technique to identify feature values and combinations of feature values that are sensitive and important for a classification. This is particularly useful in fields such as medicine where this sort of micro-focus and understanding is critical in classification.
- Description: 2003005504
Dramatic flow in interactive 3D narrative
- Macfadyen, Alyx, Stranieri, Andrew, Yearwood, John
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2007
- Type: Text , Conference paper
- Relation: Paper presented at Fourth Australiasian Conference on Interactive Entertainment, IE2007, RMIT University, Melbourne, Victoria : 3rd-5th December 2007
- Full Text:
- Description: The concept of dramatic level is crucial for a model of dramatic flow. We present a framework to maintain optimal dramatic flow in an interactive 3D environment where both linear and emergent narratives co-exist. Unlike all other interactive narrative prototypes the framework advanced focuses on the optimal dramatic flow of the emerging user narrative so that although fragmented, it can be engaging and make sense. Using a sample narrative from Ovid’s Metamorphoses [18] we demonstrate a method to evaluate dramatic levels as plot points so that movement across narratives retains a strong dramatic flow. Although users may never choose to explore any given linear narrative in its entirety, the result is an engaging and rich narrative experience.
- Description: 2003004706
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2007
- Type: Text , Conference paper
- Relation: Paper presented at Fourth Australiasian Conference on Interactive Entertainment, IE2007, RMIT University, Melbourne, Victoria : 3rd-5th December 2007
- Full Text:
- Description: The concept of dramatic level is crucial for a model of dramatic flow. We present a framework to maintain optimal dramatic flow in an interactive 3D environment where both linear and emergent narratives co-exist. Unlike all other interactive narrative prototypes the framework advanced focuses on the optimal dramatic flow of the emerging user narrative so that although fragmented, it can be engaging and make sense. Using a sample narrative from Ovid’s Metamorphoses [18] we demonstrate a method to evaluate dramatic levels as plot points so that movement across narratives retains a strong dramatic flow. Although users may never choose to explore any given linear narrative in its entirety, the result is an engaging and rich narrative experience.
- Description: 2003004706
An interaction framework for scenario-based three dimensional environments
- Macfadyen, Alyx, Stranieri, Andrew, Yearwood, John
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2006
- Type: Text , Conference paper
- Relation: Paper presented at IE 2006, the 3rd Australasian Conference on Interactive Entertainment, Perth : 4th December, 2006
- Full Text:
- Reviewed:
- Description: Although popular and engaging, three dimensional environments are rarely deployed to depict strong narratives involving complex characters engaged in reasoning. The design of three dimensional environments rich in narrative and character depth can be facilitated with a detailed representation of interactions between characters. However, the representation of interaction in current 3D development environments such as game engines is quite basic. This work advances a scheme for representing interactions that integrates a representation of semantics from linguistics called FrameNet with conceptualizations of drama and narrative by Georges Polti and Joseph Campbell. The resulting interaction frame facilitates the design of 3D environments by providing designers rich, yet standard elements that include spatial and temporal data, with which to represent complex interactions in 3D environments. This has application for the authoring of dynamically generated interactive narrative environments.
- Description: E1
- Description: 2003001839
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2006
- Type: Text , Conference paper
- Relation: Paper presented at IE 2006, the 3rd Australasian Conference on Interactive Entertainment, Perth : 4th December, 2006
- Full Text:
- Reviewed:
- Description: Although popular and engaging, three dimensional environments are rarely deployed to depict strong narratives involving complex characters engaged in reasoning. The design of three dimensional environments rich in narrative and character depth can be facilitated with a detailed representation of interactions between characters. However, the representation of interaction in current 3D development environments such as game engines is quite basic. This work advances a scheme for representing interactions that integrates a representation of semantics from linguistics called FrameNet with conceptualizations of drama and narrative by Georges Polti and Joseph Campbell. The resulting interaction frame facilitates the design of 3D environments by providing designers rich, yet standard elements that include spatial and temporal data, with which to represent complex interactions in 3D environments. This has application for the authoring of dynamically generated interactive narrative environments.
- Description: E1
- Description: 2003001839
Generic arguments : A framework for supporting online deliberative discourse
- Yearwood, John, Stranieri, Andrew
- Authors: Yearwood, John , Stranieri, Andrew
- Date: 2002
- Type: Text , Conference paper
- Relation: Paper presented at the Thirteenth Australasian Conference on Information Systems, Melbourne : 4th December, 2002
- Full Text:
- Reviewed:
- Description: In this paper we propose a framework based on argumentation that can be used to support deliberative discourse on line. Online communities have several distinct advantages as very open forums but they also have some deep disadvantages. We argue that the proposed framework and web application GAAMtalk permits and encourages the positive elements of online deliberation that will enhance discussions.
- Description: E1
- Description: 2003000114
- Authors: Yearwood, John , Stranieri, Andrew
- Date: 2002
- Type: Text , Conference paper
- Relation: Paper presented at the Thirteenth Australasian Conference on Information Systems, Melbourne : 4th December, 2002
- Full Text:
- Reviewed:
- Description: In this paper we propose a framework based on argumentation that can be used to support deliberative discourse on line. Online communities have several distinct advantages as very open forums but they also have some deep disadvantages. We argue that the proposed framework and web application GAAMtalk permits and encourages the positive elements of online deliberation that will enhance discussions.
- Description: E1
- Description: 2003000114
A global optimisation approach to classification in medical diagnosis and prognosis
- Bagirov, Adil, Rubinov, Alex, Yearwood, John, Stranieri, Andrew
- Authors: Bagirov, Adil , Rubinov, Alex , Yearwood, John , Stranieri, Andrew
- Date: 2001
- Type: Text , Conference paper
- Relation: Paper presented at 34th Hawaii International Conference on System Sciences, HICSS-34, Maui, Hawaii, USA : 3rd-6th January 2001
- Full Text:
- Description: In this paper global optimisation-based techniques are studied in order to increase the accuracy of medical diagnosis and prognosis with FNA image data from the Wisconsin Diagnostic and Prognostic Breast Cancer databases. First we discuss the problem of determining the most informative features for the classification of cancerous cases in the databases under consideration. Then we apply a technique based on convex and global optimisation to breast cancer diagnosis. It allows the classification of benign cases and malignant ones and the subsequent diagnosis of patients with very high accuracy. The third application of this technique is a method that calculates centres of clusters to predict when breast cancer is likely to recur in patients for which cancer has been removed. The technique achieves higher accuracy with these databases than reported elsewhere in the literature.
- Description: 2003003950
- Authors: Bagirov, Adil , Rubinov, Alex , Yearwood, John , Stranieri, Andrew
- Date: 2001
- Type: Text , Conference paper
- Relation: Paper presented at 34th Hawaii International Conference on System Sciences, HICSS-34, Maui, Hawaii, USA : 3rd-6th January 2001
- Full Text:
- Description: In this paper global optimisation-based techniques are studied in order to increase the accuracy of medical diagnosis and prognosis with FNA image data from the Wisconsin Diagnostic and Prognostic Breast Cancer databases. First we discuss the problem of determining the most informative features for the classification of cancerous cases in the databases under consideration. Then we apply a technique based on convex and global optimisation to breast cancer diagnosis. It allows the classification of benign cases and malignant ones and the subsequent diagnosis of patients with very high accuracy. The third application of this technique is a method that calculates centres of clusters to predict when breast cancer is likely to recur in patients for which cancer has been removed. The technique achieves higher accuracy with these databases than reported elsewhere in the literature.
- Description: 2003003950
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