Delayed self-regulation and time-dependent chemical drive leads to novel states in epigenetic landscapes
- Mitra, Mitra, Taylor, Paul, Hutchison, Chris, McLeish, T. C. B., Chakrabarti, Buddapriya
- Authors: Mitra, Mitra , Taylor, Paul , Hutchison, Chris , McLeish, T. C. B. , Chakrabarti, Buddapriya
- Date: 2014
- Type: Text , Journal article
- Relation: Journal of the Royal Society Interface Vol. 11, no. 100 (2014), p.
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- Description: The epigenetic pathway of a cell as it differentiates from a stem cell state to a mature lineage-committed one has been historically understood in terms of Waddington's landscape, consisting of hills and valleys. The smooth top and valley-strewn bottom of the hill represent their undifferentiated and differentiated states, respectively. Although mathematical ideas rooted in nonlinear dynamics and bifurcation theory have been used to quantify this picture, the importance of time delays arising from multistep chemical reactions or cellular shape transformations have been ignored so far.We argue that this feature is crucial in understanding cell differentiation and explore the role of time delay in a model of a single-gene regulatory circuit.We show that the interplay of time-dependent drive and delay introduces a new regime where the system shows sustained oscillations between the two admissible steady states. We interpret these results in the light of recent perplexing experiments on inducing the pluripotent state in mouse somatic cells.We also comment on howsuch an oscillatory state can provide a framework for understanding more general feedback circuits in cell development. © 2014 The Author(s) Published by the Royal Society. All rights reserved.
- Description: The epigenetic pathway of a cell as it differentiates from a stem cell state to a mature lineage-committed one has been historically understood in terms of Waddington's landscape, consisting of hills and valleys. The smooth top and valley-strewn bottom of the hill represent their undifferentiated and differentiated states, respectively. Although mathematical ideas rooted in nonlinear dynamics and bifurcation theory have been used to quantify this picture, the importance of time delays arising from multistep chemical reactions or cellular shape transformations have been ignored so far.We argue that this feature is crucial in understanding cell differentiation and explore the role of time delay in a model of a single-gene regulatory circuit.We showthat the interplay of time-dependent drive and delay introduces a new regime where the system shows sustained oscillations between the two admissible steady states. We interpret these results in the light of recent perplexing experiments on inducing the pluripotent state in mouse somatic cells.We also comment on howsuch an oscillatory state can provide a framework for understanding more general feedback circuits in cell development. © 2014 The Author(s) Published by the Royal Society. All rights reserved.
- Authors: Mitra, Mitra , Taylor, Paul , Hutchison, Chris , McLeish, T. C. B. , Chakrabarti, Buddapriya
- Date: 2014
- Type: Text , Journal article
- Relation: Journal of the Royal Society Interface Vol. 11, no. 100 (2014), p.
- Full Text:
- Reviewed:
- Description: The epigenetic pathway of a cell as it differentiates from a stem cell state to a mature lineage-committed one has been historically understood in terms of Waddington's landscape, consisting of hills and valleys. The smooth top and valley-strewn bottom of the hill represent their undifferentiated and differentiated states, respectively. Although mathematical ideas rooted in nonlinear dynamics and bifurcation theory have been used to quantify this picture, the importance of time delays arising from multistep chemical reactions or cellular shape transformations have been ignored so far.We argue that this feature is crucial in understanding cell differentiation and explore the role of time delay in a model of a single-gene regulatory circuit.We show that the interplay of time-dependent drive and delay introduces a new regime where the system shows sustained oscillations between the two admissible steady states. We interpret these results in the light of recent perplexing experiments on inducing the pluripotent state in mouse somatic cells.We also comment on howsuch an oscillatory state can provide a framework for understanding more general feedback circuits in cell development. © 2014 The Author(s) Published by the Royal Society. All rights reserved.
- Description: The epigenetic pathway of a cell as it differentiates from a stem cell state to a mature lineage-committed one has been historically understood in terms of Waddington's landscape, consisting of hills and valleys. The smooth top and valley-strewn bottom of the hill represent their undifferentiated and differentiated states, respectively. Although mathematical ideas rooted in nonlinear dynamics and bifurcation theory have been used to quantify this picture, the importance of time delays arising from multistep chemical reactions or cellular shape transformations have been ignored so far.We argue that this feature is crucial in understanding cell differentiation and explore the role of time delay in a model of a single-gene regulatory circuit.We showthat the interplay of time-dependent drive and delay introduces a new regime where the system shows sustained oscillations between the two admissible steady states. We interpret these results in the light of recent perplexing experiments on inducing the pluripotent state in mouse somatic cells.We also comment on howsuch an oscillatory state can provide a framework for understanding more general feedback circuits in cell development. © 2014 The Author(s) Published by the Royal Society. All rights reserved.
- Hunt, Cameron, Penna, Vanessa, Gantner, Carlos, Moriarty, Niamh, Long, Benjamin
- Authors: Hunt, Cameron , Penna, Vanessa , Gantner, Carlos , Moriarty, Niamh , Long, Benjamin
- Date: 2021
- Type: Text , Journal article
- Relation: Advanced Functional Materials Vol. 31, no. 47 (2021), p.
- Full Text: false
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- Description: The survival and synaptic integration of transplanted dopaminergic (DA) progenitors are essential for ameliorating motor symptoms in Parkinson's disease (PD). Human pluripotent stem cell (hPSC)-derived DA progenitors are, however, exposed to numerous stressors prior to, and during, implantation that result in poor survival. Additionally, hPSC-derived grafts show inferior plasticity compared to fetal tissue grafts. These observations suggest that a more conducive host environment may improve graft outcomes. Here, tissue-specific support to DA progenitor grafts is provided with a fully characterized self-assembling peptide hydrogel. This biomimetic hydrogel matrix is programmed to support DA progenitors by i) including a laminin epitope within the matrix; and ii) shear encapsulating glial cell line-derived neurotrophic factor (GDNF) to ensure its sustained delivery. The biocompatible hydrogel biased a 51% increase in A9 neuron specification—a subpopulation of DA neurons critical for motor function. The sustained delivery of GDNF induced a 2.7-fold increase in DA neurons and enhanced graft plasticity, resulting in significant improvements in motor deficits at 6 months. These findings highlight the therapeutic benefit of stepwise customization of tissue-specific hydrogels to improve the physical and trophic support of human PSC-derived neural transplants, resulting in improved standardization, predictability and functional efficacy of grafts for PD. © 2021 Wiley-VCH GmbH. **Please note that there are multiple authors for this article therefore only the name of the first 5 including Federation University Australia affiliate “Benjamin Long” is provided in this record**
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