The influence of probiotics on gastrointestinal tract infections among children attending childcare : a systematic review and meta-analysis
- Ahmad, Hafiz, Peck, Blake, Terry, Daniel
- Authors: Ahmad, Hafiz , Peck, Blake , Terry, Daniel
- Date: 2022
- Type: Text , Journal article , Review
- Relation: Journal of Applied Microbiology Vol. 132, no. 3 (2022), p. 1636-1651
- Full Text:
- Reviewed:
- Description: Current literature related to the impact of probiotics on the incidence of gastrointestinal tract infections (GITIs) has shown mixed results and no systematic review available with pooled analysis exists. Thus, the aim of this systematic review was to provide contemporary evidence regarding the overall and strain-specific influence of probiotics in preventing GITIs among infants and children attending childcare centres. The review shortlisted 18 RCTs after screening through the initial search results of 779 articles. However, only 15 trials were deemed eligible, addressing at least one outcome in the pooled analysis. It is concluded that the supplementation of probiotics (overall effect) may reduce the risk of GITI episode by 26%, with Lacticaseibacillus paracasei, Limosilactobacillus reuteri and Lacticaseibacillus rhamnosus GG being specifically potent probiotic strains in reducing GITI episode, duration of infection and absence from childcare respectively. There is insufficient evidence to determine the effect of Bifidobacterium animalis subsp. lactis BB-12 based on the findings of the trials included in this review. © 2021 The Society for Applied Microbiology
- Authors: Ahmad, Hafiz , Peck, Blake , Terry, Daniel
- Date: 2022
- Type: Text , Journal article , Review
- Relation: Journal of Applied Microbiology Vol. 132, no. 3 (2022), p. 1636-1651
- Full Text:
- Reviewed:
- Description: Current literature related to the impact of probiotics on the incidence of gastrointestinal tract infections (GITIs) has shown mixed results and no systematic review available with pooled analysis exists. Thus, the aim of this systematic review was to provide contemporary evidence regarding the overall and strain-specific influence of probiotics in preventing GITIs among infants and children attending childcare centres. The review shortlisted 18 RCTs after screening through the initial search results of 779 articles. However, only 15 trials were deemed eligible, addressing at least one outcome in the pooled analysis. It is concluded that the supplementation of probiotics (overall effect) may reduce the risk of GITI episode by 26%, with Lacticaseibacillus paracasei, Limosilactobacillus reuteri and Lacticaseibacillus rhamnosus GG being specifically potent probiotic strains in reducing GITI episode, duration of infection and absence from childcare respectively. There is insufficient evidence to determine the effect of Bifidobacterium animalis subsp. lactis BB-12 based on the findings of the trials included in this review. © 2021 The Society for Applied Microbiology
- Enríquez, Natalia, Pertierra, Luis, Tejedo, Pablo, Benayas, Javier, Greenslade, Penelope, Luciáñez, María
- Authors: Enríquez, Natalia , Pertierra, Luis , Tejedo, Pablo , Benayas, Javier , Greenslade, Penelope , Luciáñez, María
- Date: 2019
- Type: Text , Journal article
- Relation: Polar biology Vol. 42, no. 5 (2019), p. 1047-1051
- Full Text: false
- Reviewed:
- Description: Biological invasions are one of the major threats to Antarctic native biodiversity and to ecosystems integrity. Regional environmental change and increasing human activity in Maritime Antarctica facilitates the introduction, establishment and colonisation of an increasing number of non-indigenous species. Systematic monitoring is an essential tool for the early detection of the arrival of non-indigenous arthropods. In this study, we compiled the results of a long-term monitoring effort from 2011 to 2017 to survey non-native collembolan species on Deception Island, a highly visited terrestrial site in South Shetland Islands (Maritime Antarctica). Results include the first record of Ceratophysella succinea (Gisin) (Hypogastruridae) in Antarctica. Moreover, the global dataset indicates that the total number and the list of cumulatively occurrence localities for non-native species observed on the island has increased over this monitoring period. This suggests that repeated monitoring is advisable to characterise the full extent of microarthropod introductions into a high biosecurity risk area and improve the effectiveness of surveillance efforts.
Responses of floodplain birds to high-amplitude precipitation fluctuations over two decades
- Reid, Tim, Lada, Hania, Selwood, Katherine, Horrocks, Gregory, Thomson, James, Mac Nally, Ralph
- Authors: Reid, Tim , Lada, Hania , Selwood, Katherine , Horrocks, Gregory , Thomson, James , Mac Nally, Ralph
- Date: 2022
- Type: Text , Journal article
- Relation: Austral Ecology Vol. 47, no. 4 (2022), p. 828-840
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- Description: Globally, high-amplitude variation in weather (e.g. precipitation) is increasing in frequency and magnitude. This appears to be so for the southern Murray-Darling Basin, Australia, where droughts of unprecedented (in the instrumental record, extending back to the mid-1800s) depth and duration (1997–first half of 2010; second half of 2012–) are being punctuated by extreme wet periods, albeit of shorter duration (‘Big Wet’, second half of 2010–first half of 2012). We have previously reported on the responses of floodplain-forest birds to the cessation of the longest recorded drought (‘Big Dry’, 1997–first half of 2010), but we found little evidence of a rebound, at least shortly after the Big Wet. However, we reasoned that there may have been insufficient time for the birds to have responded in that short time, so we repeated the survey program 5 years after the end of the Big Wet (2017). Bird occurrences, reproductive activity and success were substantially greater compared with late in the Big Dry (2009) than they had been soon after the Big Wet (2013). However, bird occurrences still fell well below measurements in the early-Big Dry (1998), so that the avifauna appears to be in decline, most probably because the length of drought periods far exceeds that of wet periods giving the birds too little time to recover fully. © 2022 The Authors. Austral Ecology published by John Wiley & Sons Australia, Ltd on behalf of Ecological Society of Australia.
- Authors: Reid, Tim , Lada, Hania , Selwood, Katherine , Horrocks, Gregory , Thomson, James , Mac Nally, Ralph
- Date: 2022
- Type: Text , Journal article
- Relation: Austral Ecology Vol. 47, no. 4 (2022), p. 828-840
- Full Text:
- Reviewed:
- Description: Globally, high-amplitude variation in weather (e.g. precipitation) is increasing in frequency and magnitude. This appears to be so for the southern Murray-Darling Basin, Australia, where droughts of unprecedented (in the instrumental record, extending back to the mid-1800s) depth and duration (1997–first half of 2010; second half of 2012–) are being punctuated by extreme wet periods, albeit of shorter duration (‘Big Wet’, second half of 2010–first half of 2012). We have previously reported on the responses of floodplain-forest birds to the cessation of the longest recorded drought (‘Big Dry’, 1997–first half of 2010), but we found little evidence of a rebound, at least shortly after the Big Wet. However, we reasoned that there may have been insufficient time for the birds to have responded in that short time, so we repeated the survey program 5 years after the end of the Big Wet (2017). Bird occurrences, reproductive activity and success were substantially greater compared with late in the Big Dry (2009) than they had been soon after the Big Wet (2013). However, bird occurrences still fell well below measurements in the early-Big Dry (1998), so that the avifauna appears to be in decline, most probably because the length of drought periods far exceeds that of wet periods giving the birds too little time to recover fully. © 2022 The Authors. Austral Ecology published by John Wiley & Sons Australia, Ltd on behalf of Ecological Society of Australia.
Achievements, developments and future challenges in the field of bioherbicides for weed control : a global review
- Roberts, Jason, Florentine, Singarayer, Fernando, Wannakuwattewaduge, Tennakoon, Kushan
- Authors: Roberts, Jason , Florentine, Singarayer , Fernando, Wannakuwattewaduge , Tennakoon, Kushan
- Date: 2022
- Type: Text , Journal article
- Relation: Plants Vol. 11, no. 17 (2022), p.
- Full Text:
- Reviewed:
- Description: The intrusion of weeds into fertile areas has resulted in significant global economic and environmental impacts on agricultural production systems and native ecosystems, hence without ongoing and repeated management actions, the maintenance or restoration of these systems will become increasingly challenging. The establishment of herbicide resistance in many species and unwanted pollution caused by synthetic herbicides has ushered in the need for alternative, eco-friendly sustainable management strategies, such as the use of bioherbicides. Of the array of bioherbicides currently available, the most successful products appear to be sourced from fungi (mycoherbicides), with at least 16 products being developed for commercial use globally. Over the last few decades, bioherbicides sourced from bacteria and plant extracts (such as allelochemicals and essential oils), together with viruses, have also shown marked success in controlling various weeds. Despite this encouraging trend, ongoing research is still required for these compounds to be economically viable and successful in the long term. It is apparent that more focused research is required for (i) the improvement of the commercialisation processes, including the cost-effectiveness and scale of production of these materials; (ii) the discovery of new production sources, such as bacteria, fungi, plants or viruses and (iii) the understanding of the environmental influence on the efficacy of these compounds, such as atmospheric CO2, humidity, soil water stress, temperature and UV radiation. © 2022 by the authors.
- Authors: Roberts, Jason , Florentine, Singarayer , Fernando, Wannakuwattewaduge , Tennakoon, Kushan
- Date: 2022
- Type: Text , Journal article
- Relation: Plants Vol. 11, no. 17 (2022), p.
- Full Text:
- Reviewed:
- Description: The intrusion of weeds into fertile areas has resulted in significant global economic and environmental impacts on agricultural production systems and native ecosystems, hence without ongoing and repeated management actions, the maintenance or restoration of these systems will become increasingly challenging. The establishment of herbicide resistance in many species and unwanted pollution caused by synthetic herbicides has ushered in the need for alternative, eco-friendly sustainable management strategies, such as the use of bioherbicides. Of the array of bioherbicides currently available, the most successful products appear to be sourced from fungi (mycoherbicides), with at least 16 products being developed for commercial use globally. Over the last few decades, bioherbicides sourced from bacteria and plant extracts (such as allelochemicals and essential oils), together with viruses, have also shown marked success in controlling various weeds. Despite this encouraging trend, ongoing research is still required for these compounds to be economically viable and successful in the long term. It is apparent that more focused research is required for (i) the improvement of the commercialisation processes, including the cost-effectiveness and scale of production of these materials; (ii) the discovery of new production sources, such as bacteria, fungi, plants or viruses and (iii) the understanding of the environmental influence on the efficacy of these compounds, such as atmospheric CO2, humidity, soil water stress, temperature and UV radiation. © 2022 by the authors.
First international external quality assessment scheme of nucleic acid amplification tests for the detection of schistosoma and soil-transmitted helminths, including strongyloides : A pilot study
- Cools, Piet, van Lieshout, Lisette, Koelewijn, Rob, Addiss, David, Ajjampur, Sitara, Ayana, Mio, Bradbury, Richard, Cantera, Jason, Dana, Daniel, Fischer, Kerstin, Imtiaz, Rubina, Kabagenyi, Joyce, Lok, James, McCarthy, James, Mejia, Rojelio, Mekonnen, Zeleke, Njenga, Sammy, Othman, Nurulhasanah, Shao, Hongguang, Traub, Rebecca, Van Esbroeck, Marjan, Vercruysse, Jozef, Vlaminck, Johnny, Williams, Steven, Verweij, Jaco, van Hellemond, Jaap, Levecke, Bruno
- Authors: Cools, Piet , van Lieshout, Lisette , Koelewijn, Rob , Addiss, David , Ajjampur, Sitara , Ayana, Mio , Bradbury, Richard , Cantera, Jason , Dana, Daniel , Fischer, Kerstin , Imtiaz, Rubina , Kabagenyi, Joyce , Lok, James , McCarthy, James , Mejia, Rojelio , Mekonnen, Zeleke , Njenga, Sammy , Othman, Nurulhasanah , Shao, Hongguang , Traub, Rebecca , Van Esbroeck, Marjan , Vercruysse, Jozef , Vlaminck, Johnny , Williams, Steven , Verweij, Jaco , van Hellemond, Jaap , Levecke, Bruno
- Date: 2020
- Type: Text , Journal article
- Relation: PLoS Neglected Tropical Diseases Vol. 14, no. 6 (2020), p. 1-19
- Full Text:
- Reviewed:
- Description: Background Nucleic acid amplification tests (NAATs) are increasingly being used as diagnostic tools for soil-transmitted helminths (STHs; Ascaris lumbricoides, Trichuris trichiura, Necator ameri-canus, Ancylostoma duodenale and A. ceylanicum), Strongyloides stercoralis and Schisto-soma in human stool. Currently, there is a large diversity of NAATs being applied, but an external quality assessment scheme (EQAS) for these diagnostics is lacking. An EQAS involves a blinded process where test results reported by a laboratory are compared to those reported by reference or expert laboratories, allowing for an objective assessment of the diagnostic performance of a laboratory. In the current study, we piloted an international EQAS for these helminths (i) to investigate the feasibility of designing and delivering an EQAS; (ii) to assess the diagnostic performance of laboratories; and (iii) to gain insights into the different NAAT protocols used. Methods and principal findings A panel of twelve stool samples and eight DNA samples was validated by six expert laboratories for the presence of six helminths (Ascaris, Trichuris, N. americanus, Ancylostoma, Strongyloides and Schistosoma). Subsequently this panel was sent to 15 globally dispersed laboratories. We found a high degree of diversity among the different DNA extraction and NAAT protocols. Although most laboratories performed well, we could clearly identify the laboratories that were poorly performing. Conclusions/Significance We showed the technical feasibility of an international EQAS for the NAAT of STHs, Stron-gyloides and Schistosoma. In addition, we documented that there are clear benefits for par-ticipating laboratories, as they can confirm and/or improve the diagnostic performance of their NAATs. Further research should aim to identify factors that explain poor performance of NAATs. © 2020 Cools et al.
- Authors: Cools, Piet , van Lieshout, Lisette , Koelewijn, Rob , Addiss, David , Ajjampur, Sitara , Ayana, Mio , Bradbury, Richard , Cantera, Jason , Dana, Daniel , Fischer, Kerstin , Imtiaz, Rubina , Kabagenyi, Joyce , Lok, James , McCarthy, James , Mejia, Rojelio , Mekonnen, Zeleke , Njenga, Sammy , Othman, Nurulhasanah , Shao, Hongguang , Traub, Rebecca , Van Esbroeck, Marjan , Vercruysse, Jozef , Vlaminck, Johnny , Williams, Steven , Verweij, Jaco , van Hellemond, Jaap , Levecke, Bruno
- Date: 2020
- Type: Text , Journal article
- Relation: PLoS Neglected Tropical Diseases Vol. 14, no. 6 (2020), p. 1-19
- Full Text:
- Reviewed:
- Description: Background Nucleic acid amplification tests (NAATs) are increasingly being used as diagnostic tools for soil-transmitted helminths (STHs; Ascaris lumbricoides, Trichuris trichiura, Necator ameri-canus, Ancylostoma duodenale and A. ceylanicum), Strongyloides stercoralis and Schisto-soma in human stool. Currently, there is a large diversity of NAATs being applied, but an external quality assessment scheme (EQAS) for these diagnostics is lacking. An EQAS involves a blinded process where test results reported by a laboratory are compared to those reported by reference or expert laboratories, allowing for an objective assessment of the diagnostic performance of a laboratory. In the current study, we piloted an international EQAS for these helminths (i) to investigate the feasibility of designing and delivering an EQAS; (ii) to assess the diagnostic performance of laboratories; and (iii) to gain insights into the different NAAT protocols used. Methods and principal findings A panel of twelve stool samples and eight DNA samples was validated by six expert laboratories for the presence of six helminths (Ascaris, Trichuris, N. americanus, Ancylostoma, Strongyloides and Schistosoma). Subsequently this panel was sent to 15 globally dispersed laboratories. We found a high degree of diversity among the different DNA extraction and NAAT protocols. Although most laboratories performed well, we could clearly identify the laboratories that were poorly performing. Conclusions/Significance We showed the technical feasibility of an international EQAS for the NAAT of STHs, Stron-gyloides and Schistosoma. In addition, we documented that there are clear benefits for par-ticipating laboratories, as they can confirm and/or improve the diagnostic performance of their NAATs. Further research should aim to identify factors that explain poor performance of NAATs. © 2020 Cools et al.
Conservation challenges for Victorian banksias: Workshop May 2020
- Muir, Annette, Heyes, Simon, Morgan, John, Hoebee, Susan, Enright, Neal, Whelan, Robert, Geschke, Andrew, Bennett, Andrew, Walsh, Sean, Weatherly, William, Milne, Robert
- Authors: Muir, Annette , Heyes, Simon , Morgan, John , Hoebee, Susan , Enright, Neal , Whelan, Robert , Geschke, Andrew , Bennett, Andrew , Walsh, Sean , Weatherly, William , Milne, Robert
- Date: 2022
- Type: Text , Journal article
- Relation: Ecological management & restoration Vol. 23, no. 2 (2022), p. 199-202
- Full Text: false
- Reviewed:
- Description: Banksias are iconic Australian plants, with a Gondwanan origin. Their specialised roots help survival on low-phosphorus soils, and many species have reproductive cycles adapted to fire. They are trophically important in many of Australia’s native forests, woodlands and heathlands, providing nectar, pollen and seeds for many species of birds, mammals and invertebrates. While legacies of land use have reduced the historic extent of some Banksia species, more recent declines have raised additional concerns about their persistence in some landscapes. A range of factors are considered to be impacting Banksia persistence (Lamont et al. 2007), including habitat loss and fragmentation (e.g. Miller et al. 2020), increased fire frequency (e.g. Bradstock et al. 1997) and climate change (e.g. Steel et al. 2019), but there is no consensus about how these interacting factors may be driving declines, and how widespread these declines may be. The challenges facing Banksia species conservation in the south-eastern state of Victoria were the focus of an online workshop in May 2020. The workshop brought together researchers and land managers from Victorian and interstate universities, Victorian government agencies and volunteer land management groups to share their knowledge of the threats facing banksias, and document ideas to reverse declines. It was organised by Arthur Rylah Institute for Environmental Research (Department Environment, Land, Water and Planning), La Trobe University (Department of Ecology, Environment and Evolution) and Federation University (Centre for eResearch and Digital Innovation). "From introduction"
A new era of integration between multiomics and spatio-temporal analysis for the translation of EMT towards clinical applications in cancer
- Fonseca Teixeira, Adilson, Wu, Siqi, Luwor, Rodney, Zhu, Hong-Jian
- Authors: Fonseca Teixeira, Adilson , Wu, Siqi , Luwor, Rodney , Zhu, Hong-Jian
- Date: 2023
- Type: Text , Journal article , Review
- Relation: Cells Vol. 12, no. 23 (2023), p.
- Full Text:
- Reviewed:
- Description: Epithelial-mesenchymal transition (EMT) is crucial to metastasis by increasing cancer cell migration and invasion. At the cellular level, EMT-related morphological and functional changes are well established. At the molecular level, critical signaling pathways able to drive EMT have been described. Yet, the translation of EMT into efficient diagnostic methods and anti-metastatic therapies is still missing. This highlights a gap in our understanding of the precise mechanisms governing EMT. Here, we discuss evidence suggesting that overcoming this limitation requires the integration of multiple omics, a hitherto neglected strategy in the EMT field. More specifically, this work summarizes results that were independently obtained through epigenomics/transcriptomics while comprehensively reviewing the achievements of proteomics in cancer research. Additionally, we prospect gains to be obtained by applying spatio-temporal multiomics in the investigation of EMT-driven metastasis. Along with the development of more sensitive technologies, the integration of currently available omics, and a look at dynamic alterations that regulate EMT at the subcellular level will lead to a deeper understanding of this process. Further, considering the significance of EMT to cancer progression, this integrative strategy may enable the development of new and improved biomarkers and therapeutics capable of increasing the survival and quality of life of cancer patients. © 2023 by the authors.
- Authors: Fonseca Teixeira, Adilson , Wu, Siqi , Luwor, Rodney , Zhu, Hong-Jian
- Date: 2023
- Type: Text , Journal article , Review
- Relation: Cells Vol. 12, no. 23 (2023), p.
- Full Text:
- Reviewed:
- Description: Epithelial-mesenchymal transition (EMT) is crucial to metastasis by increasing cancer cell migration and invasion. At the cellular level, EMT-related morphological and functional changes are well established. At the molecular level, critical signaling pathways able to drive EMT have been described. Yet, the translation of EMT into efficient diagnostic methods and anti-metastatic therapies is still missing. This highlights a gap in our understanding of the precise mechanisms governing EMT. Here, we discuss evidence suggesting that overcoming this limitation requires the integration of multiple omics, a hitherto neglected strategy in the EMT field. More specifically, this work summarizes results that were independently obtained through epigenomics/transcriptomics while comprehensively reviewing the achievements of proteomics in cancer research. Additionally, we prospect gains to be obtained by applying spatio-temporal multiomics in the investigation of EMT-driven metastasis. Along with the development of more sensitive technologies, the integration of currently available omics, and a look at dynamic alterations that regulate EMT at the subcellular level will lead to a deeper understanding of this process. Further, considering the significance of EMT to cancer progression, this integrative strategy may enable the development of new and improved biomarkers and therapeutics capable of increasing the survival and quality of life of cancer patients. © 2023 by the authors.
- Waudby, Helen, Turak, Eren, Callister, Kate, Florentine, Singarayer, Westbrooke, Martin, Palmer, Grant, Dayman, Ray
- Authors: Waudby, Helen , Turak, Eren , Callister, Kate , Florentine, Singarayer , Westbrooke, Martin , Palmer, Grant , Dayman, Ray
- Date: 2023
- Type: Text , Journal article
- Relation: Australian Journal of Zoology Vol. 71, no. 1 (2023), p.
- Full Text: false
- Reviewed:
- Description: Determining species’ distributions is challenging for cryptic species that are difficult to detect using standard techniques. The mallee worm-lizard (Aprasia inaurita Kluge, 1974) is a cryptic reptile in the family Pygopodidae, listed as Endangered in New South Wales. We modelled the species’ potential distribution (Maxent) to improve understanding of the species’ distribution and surveyed potential habitat in the Scotia Mallee region (an area with suitable habitat) from 2018 to 2022, with pitfall traps and artificial refuges (terracotta roof tiles). We completed 11 587 pitfall trap-nights and 3200 tile checks over eight monitoring sessions. Over this period, we detected six vertebrate species (all lizards) using roof tiles and 40 species with pitfall traps, but no mallee worm-lizards. Evaluation of existing records of the mallee worm-lizard from NSW suggested that the state constitutes the north-eastern edge of its continental range, with the species apparently present in low numbers across a wide swathe of south-western NSW. Most records were located within or near to spinifex or porcupine grass (Triodia spp.) communities, on private land. Species distribution modelling provided outputs that are useful for spatial prioritisation of conservation efforts for the species, with region-wide maps showing that much of the Scotia Mallee study area contains potentially suitable habitat for the mallee worm-lizard. However, habitat suitability scores for individual cells in this area were low, in some instances, because of high maximum summer temperatures and soil available water capacity. We anticipate that increasing temperatures associated with climate change may further reduce the suitability of habitat in this area in the future. © 2023 The Author(s)
Responses of necrophilous beetles to animal mass mortality in the Australian Alps
- Stone, Rebecca, Bonat, Stefanie, Newsome, Thomas, Barton, Philip
- Authors: Stone, Rebecca , Bonat, Stefanie , Newsome, Thomas , Barton, Philip
- Date: 2023
- Type: Text , Journal article
- Relation: Journal of Insect Conservation Vol. 27, no. 6 (2023), p. 865-877
- Full Text:
- Reviewed:
- Description: A diversity of insects can be found at the remains of dead animals (carrion) and they play a vital role in its decomposition and recycling. An emerging global problem with carrion is animal mass mortality events – the sudden, rapid die-off of many animals resulting in a large increase to the localised carrion resource pool. Yet, little is known about how insects respond to sudden and large inputs of carrion. We conducted an experiment in a mountainous alpine region of south-eastern Australia and compared beetle assemblages found at single carcass and mass mortality sites. We also examined the effects of vertebrate exclusion, and decomposition stage on beetles. We found 4,774 beetles representing 146 different species/morphospecies from 17 families. The most abundant species was Saprinus cyaneus cyaneus (Histeridae), and species of Staphylinidae and Silphidae also dominated the fauna, which is typical for necrophilous beetles in Australia. We also found a clear temporal change in beetle assemblages, with abundance and richness peaking during the active decay stage. We found that beetle abundance was greater at single carcasses than mass mortality sites, possibly as an artifact of sampling, and that species richness was similar among these two carcass treatment types. We found no significant effect of vertebrate exclusion on beetles, suggesting that large scavengers in the study system may not influence necrophilous insect communities around carrion. Implications for insect conservation: Our study highlights the diversity of beetles that can be found at carrion and their similar composition to the fauna found in other areas in the south-east of the Australian continent. Beetles may have reduced abundance at mass mortality sites which could affect their ability to contribute to carrion removal relative to smaller carrion quantities. Further research is required to quantify the role of other insects in carrion removal under a range of natural and mass mortality scenarios. © 2023, The Author(s).
- Authors: Stone, Rebecca , Bonat, Stefanie , Newsome, Thomas , Barton, Philip
- Date: 2023
- Type: Text , Journal article
- Relation: Journal of Insect Conservation Vol. 27, no. 6 (2023), p. 865-877
- Full Text:
- Reviewed:
- Description: A diversity of insects can be found at the remains of dead animals (carrion) and they play a vital role in its decomposition and recycling. An emerging global problem with carrion is animal mass mortality events – the sudden, rapid die-off of many animals resulting in a large increase to the localised carrion resource pool. Yet, little is known about how insects respond to sudden and large inputs of carrion. We conducted an experiment in a mountainous alpine region of south-eastern Australia and compared beetle assemblages found at single carcass and mass mortality sites. We also examined the effects of vertebrate exclusion, and decomposition stage on beetles. We found 4,774 beetles representing 146 different species/morphospecies from 17 families. The most abundant species was Saprinus cyaneus cyaneus (Histeridae), and species of Staphylinidae and Silphidae also dominated the fauna, which is typical for necrophilous beetles in Australia. We also found a clear temporal change in beetle assemblages, with abundance and richness peaking during the active decay stage. We found that beetle abundance was greater at single carcasses than mass mortality sites, possibly as an artifact of sampling, and that species richness was similar among these two carcass treatment types. We found no significant effect of vertebrate exclusion on beetles, suggesting that large scavengers in the study system may not influence necrophilous insect communities around carrion. Implications for insect conservation: Our study highlights the diversity of beetles that can be found at carrion and their similar composition to the fauna found in other areas in the south-east of the Australian continent. Beetles may have reduced abundance at mass mortality sites which could affect their ability to contribute to carrion removal relative to smaller carrion quantities. Further research is required to quantify the role of other insects in carrion removal under a range of natural and mass mortality scenarios. © 2023, The Author(s).
Conserving focal insect groups in woodland remnants : the role of landscape context and habitat structure on cross-taxonomic congruence
- Yong, Ding, Barton, Philip, Okada, Sachiko, Crane, Mason, Cunningham, Saul, Lindenmayer, David
- Authors: Yong, Ding , Barton, Philip , Okada, Sachiko , Crane, Mason , Cunningham, Saul , Lindenmayer, David
- Date: 2020
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 115, no. (2020), p.
- Full Text:
- Reviewed:
- Description: Determining the shared responses of different taxa to landscape modification is a key step for identifying which groups of species are good surrogates for other groups. Yet, surprisingly little is known about the spatial processes that drive cross-taxonomic congruence of diversity and how this knowledge can be used to improve the management of modified landscapes for biodiversity, especially insects. We investigated how assemblages of two ecologically important insect groups, wild bees and beetles, respond to different landscape contexts and habitat structure in an Australian agricultural landscape, and how this, in turn, influenced either group's potential as a surrogate for the other. Bee and ground-active beetle assemblages were sampled in remnant woodland patches in two landscape contexts: woodland patches surrounded by pine plantation and woodland patches surrounded by open grazing land. Bee species richness, and the richness of functionally-defined bee groups did not differ between landscape contexts, in contrast to beetles. We found that landscape context exerted a stronger effect on species composition than species richness of both groups. Although some landscape and habitat variables were useful in predicting the diversity of both insect groups, few were shared. Our findings showed that bee and beetles are poor surrogates for each other in landscapes that are highly modified. Our study highlighted the need to consider: (1) taxon-specific responses to landscape context, (2) the influence of different metrics of cross-taxonomic surrogacy and, (3) dissimilar ecological attributes among insect taxa when selecting insects as biodiversity surrogates. It should not be assumed that agricultural landscapes managed to conserve specific insects (e.g. bees) will necessarily benefit other insects. © 2020
- Authors: Yong, Ding , Barton, Philip , Okada, Sachiko , Crane, Mason , Cunningham, Saul , Lindenmayer, David
- Date: 2020
- Type: Text , Journal article
- Relation: Ecological Indicators Vol. 115, no. (2020), p.
- Full Text:
- Reviewed:
- Description: Determining the shared responses of different taxa to landscape modification is a key step for identifying which groups of species are good surrogates for other groups. Yet, surprisingly little is known about the spatial processes that drive cross-taxonomic congruence of diversity and how this knowledge can be used to improve the management of modified landscapes for biodiversity, especially insects. We investigated how assemblages of two ecologically important insect groups, wild bees and beetles, respond to different landscape contexts and habitat structure in an Australian agricultural landscape, and how this, in turn, influenced either group's potential as a surrogate for the other. Bee and ground-active beetle assemblages were sampled in remnant woodland patches in two landscape contexts: woodland patches surrounded by pine plantation and woodland patches surrounded by open grazing land. Bee species richness, and the richness of functionally-defined bee groups did not differ between landscape contexts, in contrast to beetles. We found that landscape context exerted a stronger effect on species composition than species richness of both groups. Although some landscape and habitat variables were useful in predicting the diversity of both insect groups, few were shared. Our findings showed that bee and beetles are poor surrogates for each other in landscapes that are highly modified. Our study highlighted the need to consider: (1) taxon-specific responses to landscape context, (2) the influence of different metrics of cross-taxonomic surrogacy and, (3) dissimilar ecological attributes among insect taxa when selecting insects as biodiversity surrogates. It should not be assumed that agricultural landscapes managed to conserve specific insects (e.g. bees) will necessarily benefit other insects. © 2020
The ephemeral resource patch concept
- Butterworth, Nathan, Benbow, M., Barton, Philip
- Authors: Butterworth, Nathan , Benbow, M. , Barton, Philip
- Date: 2023
- Type: Text , Journal article
- Relation: Biological Reviews Vol. 98, no. 3 (2023), p. 697-726
- Full Text:
- Reviewed:
- Description: Ephemeral resource patches (ERPs) – short lived resources including dung, carrion, temporary pools, rotting vegetation, decaying wood, and fungi – are found throughout every ecosystem. Their short-lived dynamics greatly enhance ecosystem heterogeneity and have shaped the evolutionary trajectories of a wide range of organisms – from bacteria to insects and amphibians. Despite this, there has been no attempt to distinguish ERPs clearly from other resource types, to identify their shared spatiotemporal characteristics, or to articulate their broad ecological and evolutionary influences on biotic communities. Here, we define ERPs as any distinct consumable resources which (i) are homogeneous (genetically, chemically, or structurally) relative to the surrounding matrix, (ii) host a discrete multitrophic community consisting of species that cannot replicate solely in any of the surrounding matrix, and (iii) cannot maintain a balance between depletion and renewal, which in turn, prevents multiple generations of consumers/users or reaching a community equilibrium. We outline the wide range of ERPs that fit these criteria, propose 12 spatiotemporal characteristics along which ERPs can vary, and synthesise a large body of literature that relates ERP dynamics to ecological and evolutionary theory. We draw this knowledge together and present a new unifying conceptual framework that incorporates how ERPs have shaped the adaptive trajectories of organisms, the structure of ecosystems, and how they can be integrated into biodiversity management and conservation. Future research should focus on how inter- and intra-resource variation occurs in nature – with a particular focus on resource × environment × genotype interactions. This will likely reveal novel adaptive strategies, aid the development of new eco-evolutionary theory, and greatly improve our understanding of the form and function of organisms and ecosystems. © 2022 The Authors. Biological Reviews published by John Wiley & Sons Ltd on behalf of Cambridge Philosophical Society.
- Authors: Butterworth, Nathan , Benbow, M. , Barton, Philip
- Date: 2023
- Type: Text , Journal article
- Relation: Biological Reviews Vol. 98, no. 3 (2023), p. 697-726
- Full Text:
- Reviewed:
- Description: Ephemeral resource patches (ERPs) – short lived resources including dung, carrion, temporary pools, rotting vegetation, decaying wood, and fungi – are found throughout every ecosystem. Their short-lived dynamics greatly enhance ecosystem heterogeneity and have shaped the evolutionary trajectories of a wide range of organisms – from bacteria to insects and amphibians. Despite this, there has been no attempt to distinguish ERPs clearly from other resource types, to identify their shared spatiotemporal characteristics, or to articulate their broad ecological and evolutionary influences on biotic communities. Here, we define ERPs as any distinct consumable resources which (i) are homogeneous (genetically, chemically, or structurally) relative to the surrounding matrix, (ii) host a discrete multitrophic community consisting of species that cannot replicate solely in any of the surrounding matrix, and (iii) cannot maintain a balance between depletion and renewal, which in turn, prevents multiple generations of consumers/users or reaching a community equilibrium. We outline the wide range of ERPs that fit these criteria, propose 12 spatiotemporal characteristics along which ERPs can vary, and synthesise a large body of literature that relates ERP dynamics to ecological and evolutionary theory. We draw this knowledge together and present a new unifying conceptual framework that incorporates how ERPs have shaped the adaptive trajectories of organisms, the structure of ecosystems, and how they can be integrated into biodiversity management and conservation. Future research should focus on how inter- and intra-resource variation occurs in nature – with a particular focus on resource × environment × genotype interactions. This will likely reveal novel adaptive strategies, aid the development of new eco-evolutionary theory, and greatly improve our understanding of the form and function of organisms and ecosystems. © 2022 The Authors. Biological Reviews published by John Wiley & Sons Ltd on behalf of Cambridge Philosophical Society.
Watching the tide roll away-reply to Tibby et al (2020)
- Authors: Gell, Peter
- Date: 2020
- Type: Text , Journal article , Review
- Relation: Pacific Conservation Biology Vol. 26, no. 4 (2020), p. 338-343
- Full Text: false
- Reviewed:
- Description: The published findings on the diatom-inferred condition of a terminal lake in the Murray-Darling Basin were overlooked in favour of a revised unpublished interpretation, without the provision of new evidence or argument, posted on the website of the managing state government. Coauthors of the posted report have responded (Tibby et al. 2020) to the publication (Gell 2020) that outlined the changes made to this interpretation. This reply reaffirms that subtle changes were made to published interpretations and that these were critical in the development of a watering plan for the system. It also illustrates that anecdotal evidence was used selectively but would be a valuable contribution if aligned to known climatic variability. Further, this response corrects the widespread misunderstanding that signatory nations to the Ramsar Convention are obliged to retain listed wetlands in the condition observed at the time of listing. Finally, this response contests the favouring of certain evidence and seeks an approach that reconciles all available evidence, incorporates variability into planning and prepares for future management challenges. © 2020 CSIRO.
Filter feature selection based boolean modelling for genetic network inference
- Gamage, Hasini, Chetty, Madhu, Shatte, Adrian, Hallinan, Jennifer
- Authors: Gamage, Hasini , Chetty, Madhu , Shatte, Adrian , Hallinan, Jennifer
- Date: 2022
- Type: Text , Journal article
- Relation: BioSystems Vol. 221, no. (2022), p.
- Full Text:
- Reviewed:
- Description: The reconstruction of Gene Regulatory Networks (GRNs) from time series gene expression data is highly relevant for the discovery of complex biological interactions and dynamics. Various computational strategies have been developed for this task, but most approaches have low computational efficiency and are not able to cope with high-dimensional, low sample-number, gene expression data. In this paper, we introduce a novel combined filter feature selection approach for efficient and accurate inference of GRNs. A Boolean framework for network modelling is used to demonstrate the efficacy of the proposed approach. Using discretized microarray expression data, the genes most relevant to each target gene are first filtered using ReliefF, an instance-based feature ranking method that is here applied for the first time to GRN inference. Then, further gene selection from the filtered-gene list is done using a mutual information-based min-redundancy max-relevance criterion by eliminating irrelevant genes. This combined method is executed on resampled datasets to finalize the optimal set of regulatory genes. Building upon our previous research, a Pearson correlation coefficient-based Boolean modelling approach is utilized for the efficient identification of the optimal regulatory rules associated with selected regulatory genes. The proposed approach was evaluated using gene expression datasets from small-scale and medium-scale real gene networks, and was observed to be more effective than Linear Discriminant Analysis, performed better than the individual feature selection methods, and obtained improved Structural Accuracy with a higher number of true positives than other state-of-the-art methods, while outperforming these methods with respect to Dynamic Accuracy and efficiency. © 2022 Elsevier B.V.
- Authors: Gamage, Hasini , Chetty, Madhu , Shatte, Adrian , Hallinan, Jennifer
- Date: 2022
- Type: Text , Journal article
- Relation: BioSystems Vol. 221, no. (2022), p.
- Full Text:
- Reviewed:
- Description: The reconstruction of Gene Regulatory Networks (GRNs) from time series gene expression data is highly relevant for the discovery of complex biological interactions and dynamics. Various computational strategies have been developed for this task, but most approaches have low computational efficiency and are not able to cope with high-dimensional, low sample-number, gene expression data. In this paper, we introduce a novel combined filter feature selection approach for efficient and accurate inference of GRNs. A Boolean framework for network modelling is used to demonstrate the efficacy of the proposed approach. Using discretized microarray expression data, the genes most relevant to each target gene are first filtered using ReliefF, an instance-based feature ranking method that is here applied for the first time to GRN inference. Then, further gene selection from the filtered-gene list is done using a mutual information-based min-redundancy max-relevance criterion by eliminating irrelevant genes. This combined method is executed on resampled datasets to finalize the optimal set of regulatory genes. Building upon our previous research, a Pearson correlation coefficient-based Boolean modelling approach is utilized for the efficient identification of the optimal regulatory rules associated with selected regulatory genes. The proposed approach was evaluated using gene expression datasets from small-scale and medium-scale real gene networks, and was observed to be more effective than Linear Discriminant Analysis, performed better than the individual feature selection methods, and obtained improved Structural Accuracy with a higher number of true positives than other state-of-the-art methods, while outperforming these methods with respect to Dynamic Accuracy and efficiency. © 2022 Elsevier B.V.
Modeled approaches to estimating blue carbon accumulation with mangrove restoration to support a blue carbon accounting method for Australia
- Lovelock, Catherine, Adame, Fernanda, Butler, Don, Kelleway, Jeffrey, Dittmann, Sabine, Fest, Benedikt, King, Karen, Macreadie, Peter, Mitchell, Katherine, Newnham, Mark, Ola, Anne, Owers, Christopher
- Authors: Lovelock, Catherine , Adame, Fernanda , Butler, Don , Kelleway, Jeffrey , Dittmann, Sabine , Fest, Benedikt , King, Karen , Macreadie, Peter , Mitchell, Katherine , Newnham, Mark , Ola, Anne , Owers, Christopher
- Date: 2022
- Type: Text , Journal article
- Relation: Limnology and Oceanography Vol. 67, no. S2 (2022), p. S50-S60
- Full Text:
- Reviewed:
- Description: The development and refinement of methods for estimating organic carbon accumulation in biomass and soils during mangrove restoration and rehabilitation can encourage uptake of restoration projects for their ecosystem services, including those of climate change mitigation, or blue carbon. To support the development of a blue carbon method for Australia under the Emission Reduction Fund scheme we investigated; (1) whether carbon accumulation data from natural mangroves could be used to estimate carbon accumulation during restoration; (2) modeling mangrove biomass accumulation; and (3) how modeled carbon accumulation could be achieved over heterogeneous sites. First, we assessed carbon accumulation in soil and biomass pools from the global literature, finding that estimating carbon accumulation using data from natural mangroves provided similar estimates as those for restored or rehabilitated mangroves. We assessed mangrove biomass accumulation from global chronosequence studies, which we used to develop regional models for estimating biomass accumulation with restoration in Australia using values from local natural mangroves. Estimating biomass carbon accumulation using site-based means of stand biomass provided similar estimates as values estimated through use of regional means values stratified by elevation; and reduced overestimates of biomass carbon accumulation that were based on regional mean values. Modeling soil carbon accumulation over environmentally heterogeneous project sites can apply a similar approach, stratifying over variation in site elevation. Our analysis provides a strategy for modeling blue carbon pools for an Australian blue carbon method that accommodates regional differences and is based on data from natural mangroves. © 2022 The Authors. Limnology and Oceanography published by Wiley Periodicals LLC on behalf of Association for the Sciences of Limnology and Oceanography.
- Authors: Lovelock, Catherine , Adame, Fernanda , Butler, Don , Kelleway, Jeffrey , Dittmann, Sabine , Fest, Benedikt , King, Karen , Macreadie, Peter , Mitchell, Katherine , Newnham, Mark , Ola, Anne , Owers, Christopher
- Date: 2022
- Type: Text , Journal article
- Relation: Limnology and Oceanography Vol. 67, no. S2 (2022), p. S50-S60
- Full Text:
- Reviewed:
- Description: The development and refinement of methods for estimating organic carbon accumulation in biomass and soils during mangrove restoration and rehabilitation can encourage uptake of restoration projects for their ecosystem services, including those of climate change mitigation, or blue carbon. To support the development of a blue carbon method for Australia under the Emission Reduction Fund scheme we investigated; (1) whether carbon accumulation data from natural mangroves could be used to estimate carbon accumulation during restoration; (2) modeling mangrove biomass accumulation; and (3) how modeled carbon accumulation could be achieved over heterogeneous sites. First, we assessed carbon accumulation in soil and biomass pools from the global literature, finding that estimating carbon accumulation using data from natural mangroves provided similar estimates as those for restored or rehabilitated mangroves. We assessed mangrove biomass accumulation from global chronosequence studies, which we used to develop regional models for estimating biomass accumulation with restoration in Australia using values from local natural mangroves. Estimating biomass carbon accumulation using site-based means of stand biomass provided similar estimates as values estimated through use of regional means values stratified by elevation; and reduced overestimates of biomass carbon accumulation that were based on regional mean values. Modeling soil carbon accumulation over environmentally heterogeneous project sites can apply a similar approach, stratifying over variation in site elevation. Our analysis provides a strategy for modeling blue carbon pools for an Australian blue carbon method that accommodates regional differences and is based on data from natural mangroves. © 2022 The Authors. Limnology and Oceanography published by Wiley Periodicals LLC on behalf of Association for the Sciences of Limnology and Oceanography.
Impacts of land management practices on blue carbon stocks and greenhouse gas fluxes in coastal ecosystems—a meta-analysis
- O’Connor, Jack, Fest, Benedikt, Sievers, Michael, Swearer, Stephen
- Authors: O’Connor, Jack , Fest, Benedikt , Sievers, Michael , Swearer, Stephen
- Date: 2020
- Type: Text , Journal article
- Relation: Global Change Biology Vol. 26, no. 3 (2020), p. 1354-1366
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- Reviewed:
- Description: Global recognition of climate change and its predicted consequences has created the need for practical management strategies for increasing the ability of natural ecosystems to capture and store atmospheric carbon. Mangrove forests, saltmarshes and seagrass meadows, referred to as blue carbon ecosystems (BCEs), are hotspots of atmospheric CO2 storage due to their capacity to sequester carbon at a far higher rate than terrestrial forests. Despite increased effort to understand the mechanisms underpinning blue carbon fluxes, there has been little synthesis of how management activities influence carbon stocks and greenhouse gas (GHG) fluxes in BCEs. Here, we present a global meta-analysis of 111 studies that measured how carbon stocks and GHG fluxes in BCEs respond to various coastal management strategies. Research effort has focused mainly on restoration approaches, which resulted in significant increases in blue carbon after 4 years compared to degraded sites, and the potential to reach parity with natural sites after 7–17 years. Lesser studied management alternatives, such as sediment manipulation and altered hydrology, showed only increases in biomass and weaker responses for soil carbon stocks and sequestration. The response of GHG emissions to management was complex, with managed sites emitting less than natural reference sites but emitting more compared to degraded sites. Individual GHGs also differed in their responses to management. To date, blue carbon management studies are underrepresented in the southern hemisphere and are usually limited in duration (61% of studies <3 years duration). Our meta-analysis describes the current state of blue carbon management from the available data and highlights recommendations for prioritizing conservation management, extending monitoring time frames of BCE carbon stocks, improving our understanding of GHG fluxes in open coastal systems and redistributing management and research effort into understudied, high-risk areas. © 2019 John Wiley & Sons Ltd
- Authors: O’Connor, Jack , Fest, Benedikt , Sievers, Michael , Swearer, Stephen
- Date: 2020
- Type: Text , Journal article
- Relation: Global Change Biology Vol. 26, no. 3 (2020), p. 1354-1366
- Full Text:
- Reviewed:
- Description: Global recognition of climate change and its predicted consequences has created the need for practical management strategies for increasing the ability of natural ecosystems to capture and store atmospheric carbon. Mangrove forests, saltmarshes and seagrass meadows, referred to as blue carbon ecosystems (BCEs), are hotspots of atmospheric CO2 storage due to their capacity to sequester carbon at a far higher rate than terrestrial forests. Despite increased effort to understand the mechanisms underpinning blue carbon fluxes, there has been little synthesis of how management activities influence carbon stocks and greenhouse gas (GHG) fluxes in BCEs. Here, we present a global meta-analysis of 111 studies that measured how carbon stocks and GHG fluxes in BCEs respond to various coastal management strategies. Research effort has focused mainly on restoration approaches, which resulted in significant increases in blue carbon after 4 years compared to degraded sites, and the potential to reach parity with natural sites after 7–17 years. Lesser studied management alternatives, such as sediment manipulation and altered hydrology, showed only increases in biomass and weaker responses for soil carbon stocks and sequestration. The response of GHG emissions to management was complex, with managed sites emitting less than natural reference sites but emitting more compared to degraded sites. Individual GHGs also differed in their responses to management. To date, blue carbon management studies are underrepresented in the southern hemisphere and are usually limited in duration (61% of studies <3 years duration). Our meta-analysis describes the current state of blue carbon management from the available data and highlights recommendations for prioritizing conservation management, extending monitoring time frames of BCE carbon stocks, improving our understanding of GHG fluxes in open coastal systems and redistributing management and research effort into understudied, high-risk areas. © 2019 John Wiley & Sons Ltd
- Nikooharf Salehi, Elahe, Jaydari Fard, Saeed, Jaberzadeh, Shapour, Zoghi, Maryam
- Authors: Nikooharf Salehi, Elahe , Jaydari Fard, Saeed , Jaberzadeh, Shapour , Zoghi, Maryam
- Date: 2022
- Type: Text , Journal article
- Relation: Journal of Motor Behavior Vol. 54, no. 3 (2022), p. 327-336
- Full Text: false
- Reviewed:
- Description: ABSTRACT.: The issue of using transcranial direct current stimulation (tDCS) to improve sport performance has recently been a topic of interest for researchers. The purpose of this study was to examine the effect of tDCS over left dorsolateral prefrontal cortex (DLPFC) on mental fatigue and physical performance in professional swimmers. Fifteen professional swimmers were randomly assigned in a single-blinded, randomized, counterbalanced order to sham, anodal and cathodal stimulation conditions. Mental fatigue was induced by using a 60-min modified Stroop color-word task. Subjective ratings of mental fatigue were measured before and after the stroop task. The results showed that only anodal tDCS of the left DLPFC reduces adverse effects of mental fatigue in 50-meter swimming performance, whereas cathodal stimulation had no significant effect. ©, Copyright © Taylor & Francis Group, LLC.
MSCET : a multi-scenario offloading schedule for biomedical data processing and analysis in cloud-edge-terminal collaborative vehicular networks
- Ni, Zhichen, Chen, Honglong, Li, Zhe, Wang, Xiaomeng, Yan, Na, Liu, Weifeng, Xia, Feng
- Authors: Ni, Zhichen , Chen, Honglong , Li, Zhe , Wang, Xiaomeng , Yan, Na , Liu, Weifeng , Xia, Feng
- Date: 2023
- Type: Text , Journal article
- Relation: IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 20, no. 4 (2023), p. 2376-2386
- Full Text:
- Reviewed:
- Description: With the rapid development of Artificial Intelligence (AI) and Internet of Things (IoTs), an increasing number of computation intensive or delay sensitive biomedical data processing and analysis tasks are produced in vehicles, bringing more and more challenges to the biometric monitoring of drivers. Edge computing is a new paradigm to solve these challenges by offloading tasks from the resource-limited vehicles to Edge Servers (ESs) in Road Side Units (RSUs). However, most of the traditional offloading schedules for vehicular networks concentrate on the edge, while some tasks may be too complex for ESs to process. To this end, we consider a collaborative vehicular network in which the cloud, edge and terminal can cooperate with each other to accomplish the tasks. The vehicles can offload the computation intensive tasks to the cloud to save the resource of edge. We further construct the virtual resource pool which can integrate the resource of multiple ESs since some regions may be covered by multiple RSUs. In this paper, we propose a Multi-Scenario offloading schedule for biomedical data processing and analysis in Cloud-Edge-Terminal collaborative vehicular networks called MSCET. The parameters of the proposed MSCET are optimized to maximize the system utility. We also conduct extensive simulations to evaluate the proposed MSCET and the results illustrate that MSCET outperforms other existing schedules. © 2004-2012 IEEE.
- Authors: Ni, Zhichen , Chen, Honglong , Li, Zhe , Wang, Xiaomeng , Yan, Na , Liu, Weifeng , Xia, Feng
- Date: 2023
- Type: Text , Journal article
- Relation: IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 20, no. 4 (2023), p. 2376-2386
- Full Text:
- Reviewed:
- Description: With the rapid development of Artificial Intelligence (AI) and Internet of Things (IoTs), an increasing number of computation intensive or delay sensitive biomedical data processing and analysis tasks are produced in vehicles, bringing more and more challenges to the biometric monitoring of drivers. Edge computing is a new paradigm to solve these challenges by offloading tasks from the resource-limited vehicles to Edge Servers (ESs) in Road Side Units (RSUs). However, most of the traditional offloading schedules for vehicular networks concentrate on the edge, while some tasks may be too complex for ESs to process. To this end, we consider a collaborative vehicular network in which the cloud, edge and terminal can cooperate with each other to accomplish the tasks. The vehicles can offload the computation intensive tasks to the cloud to save the resource of edge. We further construct the virtual resource pool which can integrate the resource of multiple ESs since some regions may be covered by multiple RSUs. In this paper, we propose a Multi-Scenario offloading schedule for biomedical data processing and analysis in Cloud-Edge-Terminal collaborative vehicular networks called MSCET. The parameters of the proposed MSCET are optimized to maximize the system utility. We also conduct extensive simulations to evaluate the proposed MSCET and the results illustrate that MSCET outperforms other existing schedules. © 2004-2012 IEEE.
Hybridisation rates, population structure, and dispersal of sambar deer (Cervus unicolor) and rusa deer (Cervus timorensis) in south-eastern Australia
- Hill, Erin, Murphy, Nicholas, Li-Williams, Scarlett, Davies, Christopher, Forsyth, David, Comte, Sebastien, Rollins, Lee, Hogan, Fiona, Wedrowicz, Faye, Crittle, Troy, Thomas, Elaine, Woodford, Luke, Pacioni, Carlo
- Authors: Hill, Erin , Murphy, Nicholas , Li-Williams, Scarlett , Davies, Christopher , Forsyth, David , Comte, Sebastien , Rollins, Lee , Hogan, Fiona , Wedrowicz, Faye , Crittle, Troy , Thomas, Elaine , Woodford, Luke , Pacioni, Carlo
- Date: 2023
- Type: Text , Journal article
- Relation: Wildlife Research Vol. 50, no. 9 (2023), p. 669-687
- Full Text:
- Reviewed:
- Description: Context. Introduced populations of sambar deer (Cervus unicolor) and rusa deer (Cervus timorensis) are present across south-eastern Australia and are subject to local population control to alleviate their negative impacts. For management to be effective, identification of dispersal capability and management units is necessary. These species also readily hybridise, so additional investigation of hybridisation rates across their distributions is necessary to understand the interactions between the two species. Aims. Measure the hybridisation rate of sambar and rusa deer, assess broad-scale population structure present within both species and identify distinct management units for future population control, and measure the likely dispersal capability of both species. Methods. In total, 198 sambar deer, 189 rusa deer, and three suspected hybrid samples were collected across Victoria and New South Wales (NSW). After sequencing and filtering, 14 099 polymorphic single-nucleotide polymorphism (SNP) markers were retained for analysis. Hybridisation rates were assessed before the data were split by species to identify population structure, diversity indices, and dispersal distances. Key results. Across the entire dataset, 17 hybrids were detected. Broad-scale population structure was evident in sambar deer, but not among the sites where rusa deer were sampled. Analysis of dispersal ability showed that a majority of deer movement occurred within 20 km in both species, suggesting limited dispersal. Conclusions. Distinct management units of sambar deer can be identified from the dataset, allowing independent population control. Although broad-scale population structure was not evident in the rusa deer populations, dispersal limits identified suggest that rusa deer sites sampled in this study could be managed separately. Sambar × rusa deer hybrids are present in both Victoria and NSW and can be difficult to detect on the basis of morphology alone. Implications. Genetic analysis can identify broad-scale management units necessary for population control, and estimates of dispersal capability can assist in delineating management units where broad-scale population structure may not be apparent. The negative impacts associated with hybridisation require further investigation to determine whether removal of hybrids should be considered a priority management aim. © 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing.
- Authors: Hill, Erin , Murphy, Nicholas , Li-Williams, Scarlett , Davies, Christopher , Forsyth, David , Comte, Sebastien , Rollins, Lee , Hogan, Fiona , Wedrowicz, Faye , Crittle, Troy , Thomas, Elaine , Woodford, Luke , Pacioni, Carlo
- Date: 2023
- Type: Text , Journal article
- Relation: Wildlife Research Vol. 50, no. 9 (2023), p. 669-687
- Full Text:
- Reviewed:
- Description: Context. Introduced populations of sambar deer (Cervus unicolor) and rusa deer (Cervus timorensis) are present across south-eastern Australia and are subject to local population control to alleviate their negative impacts. For management to be effective, identification of dispersal capability and management units is necessary. These species also readily hybridise, so additional investigation of hybridisation rates across their distributions is necessary to understand the interactions between the two species. Aims. Measure the hybridisation rate of sambar and rusa deer, assess broad-scale population structure present within both species and identify distinct management units for future population control, and measure the likely dispersal capability of both species. Methods. In total, 198 sambar deer, 189 rusa deer, and three suspected hybrid samples were collected across Victoria and New South Wales (NSW). After sequencing and filtering, 14 099 polymorphic single-nucleotide polymorphism (SNP) markers were retained for analysis. Hybridisation rates were assessed before the data were split by species to identify population structure, diversity indices, and dispersal distances. Key results. Across the entire dataset, 17 hybrids were detected. Broad-scale population structure was evident in sambar deer, but not among the sites where rusa deer were sampled. Analysis of dispersal ability showed that a majority of deer movement occurred within 20 km in both species, suggesting limited dispersal. Conclusions. Distinct management units of sambar deer can be identified from the dataset, allowing independent population control. Although broad-scale population structure was not evident in the rusa deer populations, dispersal limits identified suggest that rusa deer sites sampled in this study could be managed separately. Sambar × rusa deer hybrids are present in both Victoria and NSW and can be difficult to detect on the basis of morphology alone. Implications. Genetic analysis can identify broad-scale management units necessary for population control, and estimates of dispersal capability can assist in delineating management units where broad-scale population structure may not be apparent. The negative impacts associated with hybridisation require further investigation to determine whether removal of hybrids should be considered a priority management aim. © 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing.
Disseminating sleep education to graduate psychology programs online : a knowledge translation study to improve the management of insomnia
- Meaklim, Hailey, Meltzer, Lisa, Rehm, Imogen, Junge, Moira, Monfries, Melissa, Kennedy, Gerard, Bucks, Romola, Graco, Marnie, Jackson, Melinda
- Authors: Meaklim, Hailey , Meltzer, Lisa , Rehm, Imogen , Junge, Moira , Monfries, Melissa , Kennedy, Gerard , Bucks, Romola , Graco, Marnie , Jackson, Melinda
- Date: 2023
- Type: Text , Journal article
- Relation: Sleep Vol. 46, no. 10 (2023), p.
- Full Text:
- Reviewed:
- Description: Study Objectives: Despite the negative impact of poor sleep on mental health, evidence-based insomnia management guidelines have not been translated into routine mental healthcare. Here, we evaluate a state-wide knowledge translation effort to disseminate sleep and insomnia education to graduate psychology programs online using the RE-AIM (reach, effectiveness, adoption, implementation, and maintenance) evaluation framework. Methods: Using a non-randomized waitlist control design, graduate psychology students attended a validated 6-hour online sleep education workshop delivered live as part of their graduate psychology program in Victoria, Australia. Sleep knowledge, attitudes, and practice assessments were conducted pre- and post-program, with long-term feedback collected at 12 months. Results: Seven out of ten graduate psychology programs adopted the workshop (adoption rate = 70%). The workshop reached 313 graduate students, with a research participation rate of 81%. The workshop was effective at improving students’ sleep knowledge and self-efficacy to manage sleep disturbances using cognitive behavioral therapy for insomnia (CBT-I), compared to the waitlist control with medium-to-large effect sizes (all p < .001). Implementation feedback was positive, with 96% of students rating the workshop as very good-to-excellent. Twelve-month maintenance data demonstrated that 83% of students had used the sleep knowledge/skills learned in the workshop in their clinical practice. However, more practical training is required to achieve CBT-I competency. Conclusions: Online sleep education workshops can be scaled to deliver cost-effective foundational sleep training to graduate psychology students. This workshop will accelerate the translation of insomnia management guidelines into psychology practice to improve sleep and mental health outcomes nationwide. © The Author(s) 2023. Published by Oxford University Press on behalf of Sleep Research Society.
- Authors: Meaklim, Hailey , Meltzer, Lisa , Rehm, Imogen , Junge, Moira , Monfries, Melissa , Kennedy, Gerard , Bucks, Romola , Graco, Marnie , Jackson, Melinda
- Date: 2023
- Type: Text , Journal article
- Relation: Sleep Vol. 46, no. 10 (2023), p.
- Full Text:
- Reviewed:
- Description: Study Objectives: Despite the negative impact of poor sleep on mental health, evidence-based insomnia management guidelines have not been translated into routine mental healthcare. Here, we evaluate a state-wide knowledge translation effort to disseminate sleep and insomnia education to graduate psychology programs online using the RE-AIM (reach, effectiveness, adoption, implementation, and maintenance) evaluation framework. Methods: Using a non-randomized waitlist control design, graduate psychology students attended a validated 6-hour online sleep education workshop delivered live as part of their graduate psychology program in Victoria, Australia. Sleep knowledge, attitudes, and practice assessments were conducted pre- and post-program, with long-term feedback collected at 12 months. Results: Seven out of ten graduate psychology programs adopted the workshop (adoption rate = 70%). The workshop reached 313 graduate students, with a research participation rate of 81%. The workshop was effective at improving students’ sleep knowledge and self-efficacy to manage sleep disturbances using cognitive behavioral therapy for insomnia (CBT-I), compared to the waitlist control with medium-to-large effect sizes (all p < .001). Implementation feedback was positive, with 96% of students rating the workshop as very good-to-excellent. Twelve-month maintenance data demonstrated that 83% of students had used the sleep knowledge/skills learned in the workshop in their clinical practice. However, more practical training is required to achieve CBT-I competency. Conclusions: Online sleep education workshops can be scaled to deliver cost-effective foundational sleep training to graduate psychology students. This workshop will accelerate the translation of insomnia management guidelines into psychology practice to improve sleep and mental health outcomes nationwide. © The Author(s) 2023. Published by Oxford University Press on behalf of Sleep Research Society.
A new systemic disease mouse model for glioblastoma capable of single-tumour-cell detection
- Ware, Thomas, Luwor, Rodney, Zhu, Hong-Jian
- Authors: Ware, Thomas , Luwor, Rodney , Zhu, Hong-Jian
- Date: 2024
- Type: Text , Journal article
- Relation: Cells Vol. 13, no. 2 (2024), p.
- Full Text:
- Reviewed:
- Description: Background: Glioblastoma is characterised by extensive infiltration into the brain parenchyma, leading to inevitable tumor recurrence and therapeutic failure. Future treatments will need to target the specific biology of tumour recurrence, but our current understanding of the underlying mechanisms is limited. Significantly, there is a lack of available methods and models that are tailored to the examination of tumour recurrence. Methods: NOD-SCID mice were orthotopically implanted with luciferase-labelled donor U87MG or MU20 glioblastoma cells. Four days later, an unlabelled recipient tumor was implanted on the contralateral side. The mice were euthanised at a humane end-point and tissue and blood samples were collected for ex vivo analyses. Results: The ex vivo analyses of the firefly-labelled MU20 tumours displayed extensive invasion at the primary tumour margins, whereas the firefly-labelled U87MG tumours exhibited expansive phenotypes with no evident invasions at the tumour margins. Luciferase signals were detected in the contralateral unlabelled recipient tumours for both the U87MG and MU20 tumours compared to the non-implanted control brain. Remarkably, tumour cells were uniformly detected in all tissue samples of the supratentorial brain region compared to the control tissue, with single tumour cells detected in some tissue samples. Circulating tumour cells were also detected in the blood samples of most of the xenografted mice. Moreover, tumour cells were detected in the lungs of all of the mice, a probable event related to haematogenous dissemination. Similar results were obtained when the U87MG cells were alternatively labelled with gaussian luciferase. Conclusions: These findings describe a systemic disease model for glioblastoma which can be used to investigate recurrence biology and therapeutic efficacy towards recurrence. © 2024 by the authors.
- Authors: Ware, Thomas , Luwor, Rodney , Zhu, Hong-Jian
- Date: 2024
- Type: Text , Journal article
- Relation: Cells Vol. 13, no. 2 (2024), p.
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- Description: Background: Glioblastoma is characterised by extensive infiltration into the brain parenchyma, leading to inevitable tumor recurrence and therapeutic failure. Future treatments will need to target the specific biology of tumour recurrence, but our current understanding of the underlying mechanisms is limited. Significantly, there is a lack of available methods and models that are tailored to the examination of tumour recurrence. Methods: NOD-SCID mice were orthotopically implanted with luciferase-labelled donor U87MG or MU20 glioblastoma cells. Four days later, an unlabelled recipient tumor was implanted on the contralateral side. The mice were euthanised at a humane end-point and tissue and blood samples were collected for ex vivo analyses. Results: The ex vivo analyses of the firefly-labelled MU20 tumours displayed extensive invasion at the primary tumour margins, whereas the firefly-labelled U87MG tumours exhibited expansive phenotypes with no evident invasions at the tumour margins. Luciferase signals were detected in the contralateral unlabelled recipient tumours for both the U87MG and MU20 tumours compared to the non-implanted control brain. Remarkably, tumour cells were uniformly detected in all tissue samples of the supratentorial brain region compared to the control tissue, with single tumour cells detected in some tissue samples. Circulating tumour cells were also detected in the blood samples of most of the xenografted mice. Moreover, tumour cells were detected in the lungs of all of the mice, a probable event related to haematogenous dissemination. Similar results were obtained when the U87MG cells were alternatively labelled with gaussian luciferase. Conclusions: These findings describe a systemic disease model for glioblastoma which can be used to investigate recurrence biology and therapeutic efficacy towards recurrence. © 2024 by the authors.