- Title
- Constraint minimization for efficient modelling of gene regulatory network
- Creator
- Ram, Ramesh; Chetty, Madhu; Bulach, Dieter
- Date
- 2008
- Type
- Text; Conference paper
- Identifier
- http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/38140
- Identifier
- vital:5959
- Identifier
-
https://doi.org/10.1007/978-3-540-88436-1_18
- Abstract
- Due to various complexities, as well as noise and high dimensionality, reconstructing a gene regulatory network (GRN) from a high-throughput microarray data becomes computationally intensive.In our earlier work on causal model approach for GRN reconstruction, we had shown the superiority of Markov blanket (MB) algorithm compared to the algorithm using the existing Y and V causal models. In this paper, we show the MB algorithm can be enhanced further by application of the proposed constraint logic minimization (CLM) technique. We describe a framework for minimizing the constraint logic involved (condition independent tests) by exploiting the Markov blanket learning methods developed for a Bayesian network (BN). The constraint relationships are represented in the form of logic using K-map and with the aid of CLM increase the algorithm efficiency and the accuracy. We show improved results by investigations on both the synthetic as well as the real life yeast cell cycle data sets.
- Publisher
- Melbourne Springer Berlin
- Relation
- Third IAPR International Conference, PRIB 2008 Melbourne
- Rights
- Copyright Springer-verlag
- Rights
- This metadata is freely available under a CCO license
- Subject
- 0801 Artificial Intelligence and Image Processing
- Reviewed
- Hits: 631
- Visitors: 631
- Downloads: 0