Automatic sleep stage identification: difficulties and possible solutions
- Authors: Sukhorukova, Nadezda , Stranieri, Andrew , Ofoghi, Bahadorreza , Vamplew, Peter , Saleem, Muhammad Saad , Ma, Liping , Ugon, Adrien , Ugon, Julien , Muecke, Nial , Amiel, Hélène , Philippe, Carole , Bani-Mustafa, Ahmed , Huda, Shamsul , Bertoli, Marcello , Levy, P , Ganascia, J.G
- Date: 2010
- Type: Text , Conference proceedings
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- Description: The diagnosis of many sleep disorders is a labour intensive task that involves the specialised interpretation of numerous signals including brain wave, breath and heart rate captured in overnight polysomnogram sessions. The automation of diagnoses is challenging for data mining algorithms because the data sets are extremely large and noisy, the signals are complex and specialist's analyses vary. This work reports on the adaptation of approaches from four fields; neural networks, mathematical optimisation, financial forecasting and frequency domain analysis to the problem of automatically determing a patient's stage of sleep. Results, though preliminary, are promising and indicate that combined approaches may prove more fruitful than the reliance on a approach.
Coalescing medical systems: A challenge for health informatics
- Authors: Stranieri, Andrew , Vaughan, Stephen
- Date: 2010
- Type: Text , Conference paper
- Relation: Global Telehealth - Selected Papers from Global Telehealth 2010 (GT2010) – 15th International Conference of the International Society for Telemedicine and eHealth and 1st National Conference of the Australasian Telehealth Society
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- Description: Patients in many nations increasingly access diverse medical systems including Western medicine, Traditional Chinese Medicine, Homeopathy and Ayervedic medicine as globalisation advances. The trend toward co-existence of medical systems presents challenges for health informatics including the need to develop standards that can encompass the diversity required, the need to develop software applications that effectively inter-operate across diverse systems and the need to support patients when evaluating competing systems. This article advances the notion that the challenges can most effectively be met with the development of informatics approaches that do not assume the superiority of one medical system over another. Argument visualization to support patient decision making in selecting an appropriate medical system is presented as an application that exemplifies this stance
Exploring novel features and decision rules to identify cardiovascular autonomic neuropathy using a hybrid of wrapper-filter based feature selection
- Authors: Huda, Shamsul , Jelinek, Herbert , Ray, Biplob , Stranieri, Andrew , Yearwood, John
- Date: 2010
- Type: Text , Conference paper
- Relation: Paper presented at the 2010 6th International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2010 p. 297-302
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- Description: Cardiovascular autonomic neuropathy (CAN) is one of the important causes of mortality among diabetes patients. Statistics shows that more than 22% of people with type 2 diabetes mellitus suffer from CAN and which in turn leads to cardiovascular disease (heart attack, stroke). Therefore early detection of CAN could reduce the mortality. Traditional method for detection of CAN uses Ewing's algorithm where five noninvasive cardiovascular tests are used. Often for clinician, it is difficult to collect data from for the Ewing Battery patients due to onerous test conditions. In this paper, we propose a hybrid of wrapper-filter approach to find novel features from patients' ECG records and then generate decision rules for the new features for easier detection of CAN. In the proposed feature selection, a hybrid of filter (Maximum Relevance, MR) and wrapper (Artificial Neural Net Input Gain Measurement Approximation ANNIGMA) approaches (MR-ANNIGMA) would be used. The combined heuristics in the hybrid MRANNIGMA takes the advantages of the complementary properties of the both filter and wrapper heuristics and can find significant features. The selected features set are used to generate a new set of rules for detection of CAN. Experiments on real patient records shows that proposed method finds a smaller set of features for detection of CAN than traditional method which are clinically significant and could lead to an easier way to diagnose CAN. © 2010 IEEE.
Hybrid wrapper-filter approaches for input feature selection using maximum relevance and Artificial Neural Network Input Gain Measurement Approximation (ANNIGMA)
- Authors: Huda, Shamsul , Yearwood, John , Stranieri, Andrew
- Date: 2010
- Type: Text , Conference proceedings
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- Description: Feature selection is an important research problem in machine learning and data mining applications. This paper proposes a hybrid wrapper and filter feature selection algorithm by introducing the filter's feature ranking score in the wrapper stage to speed up the search process for wrapper and thereby finding a more compact feature subset. The approach hybridizes a Mutual Information (MI) based Maximum Relevance (MR) filter ranking heuristic with an Artificial Neural Network (ANN) based wrapper approach where Artificial Neural Network Input Gain Measurement Approximation (ANNIGMA) has been combined with MR (MR-ANNIGMA) to guide the search process in the wrapper. The novelty of our approach is that we use hybrid of wrapper and filter methods that combines filter's ranking score with the wrapper-heuristic's score to take advantages of both filter and wrapper heuristics. Performance of the proposed MRANNIGMA has been verified using bench mark data sets and compared to both independent filter and wrapper based approaches. Experimental results show that MR-ANNIGMA achieves more compact feature sets and higher accuracies than both filter and wrapper approaches alone. © 2010 IEEE.
A classification algorithm that derives weighted sum scores for insight into disease
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John , Hafen, Gaudenz
- Date: 2009
- Type: Text , Conference paper
- Relation: Paper presented at Third Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2009), Wellington, New Zealand : Vol. 97, p. 13-17
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- Description: Data mining is often performed with datasets associated with diseases in order to increase insights that can ultimately lead to improved prevention or treatment. Classification algorithms can achieve high levels of predictive accuracy but have limited application for facilitating the insight that leads to deeper understanding of aspects of the disease. This is because the representation of knowledge that arises from classification algorithms is too opaque, too complex or too sparse to facilitate insight. Clustering, association and visualisation approaches enable greater scope for clinicians to be engaged in a way that leads to insight, however predictive accuracy is compromised or non-existent. This research investigates the practical applications of Automated Weighted Sum, (AWSum), a classification algorithm that provides accuracy comparable to other techniques whilst providing some insight into the data. This is achieved by calculating a weight for each feature value that represents its influence on the class value. Clinicians are very familiar with weighted sum scoring scales so the internal representation is intuitive and easily understood. This paper presents results from the use of the AWSum approach with data from patients suffering from Cystic Fibrosis.
Deliberative discourse and reasoning from generic argument structures
- Authors: Yearwood, John , Stranieri, Andrew
- Date: 2009
- Type: Text , Journal article
- Relation: AI and Society Vol. 23, no. 3 (2009), p. 353-377
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- Description: In this article a dialectical model for practical reasoning within a community, based on the Generic/Actual Argument Model (GAAM) is advanced and its application to deliberative dialogue discussed. The GAAM, offers a dynamic template for structuring knowledge within a domain of discourse that is connected to and regulated by a community. The paper demonstrates how the community accepted generic argument structure acts to normatively influence both admissible reasoning and the progression of dialectical reasoning between participants. It is further demonstrated that these types of deliberation dialogues supported by the GAAM comply with criteria for normative principles for deliberation, specifically, Alexy's rules for discourse ethics and Hitchcock's Principles of Rational Mutual Inquiry. The connection of reasoning to the community in a documented and transparent structure assists in providing best justified reasons, principles of deliberation and ethical discourse which are important advantages for reasoning communities. © Springer-Verlag London Limited 2006.
Grid-based information retrieval for the aggregation of legal datasets in online dispute resolution
- Authors: Saeed, Ather , Stranieri, Andrew , Dazeley, Richard , Ma, Liping
- Date: 2009
- Type: Text , Journal article
- Relation: Communications of SIWN Vol. 6, no. April (2009), p. 16-22
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- Description: The Web is a stateless and complex environment when it comes to the retrieval of information from millions of computers connected to the Internet via WWW servers. Information Retrieval (IR) from heterogeneous data sources poses a great challenge as the information of interest is stored in a variety of different formats. Answering an enormous amount of queries is a resource and computational intensive task in ODR (Online Dispute Resolution). Information availability also poses a challenge when it comes to the mediation and arbitration processes in resolving eCommerce and legal disputes. A new Grid-based information retrieval model is proposed for the aggregation and replication of legal datasets from remote machines with indexed-based search facility. Datasets of interests will be indexed with a slight modification to the existing indexing scheme. A new strategy is proposed to deal with similar queries posted over and over again and how the commonality among the XML query trees are exploited and merged for the efficient retrieval of information.
Group structured reasoning for coalescing group decisions
- Authors: Yearwood, John , Stranieri, Andrew
- Date: 2009
- Type: Text , Journal article
- Relation: Group Decision and Negotiation Vol. , no. (2009), p. 1-29
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- Description: In this paper we present the notion of structured reasoning through a model, called the Generic/Actual Argument Model (GAAM). The model which has been used as a computational representation for machine modelling of reasoning and for hybrid combinations of human and machine reasoning can be used as a coalescent framework for decision making. Whilst the notion of structuring reasoning is not new, structured reasoning is advanced as a technique where group consensus on reasoning structures at various levels can be used to facilitate the comprehension of complex reasoning particularly where there are multiple perspectives. For an issue, the approach provides a scaffolding structure for cognitive co-operation and a normative reasoning structure against which group participants can identify points of difference and points in common as well as the nature of the differences and similarities. Intra-group transparency characterized by the ability to recognise points in common and understand the nature of differences is important to the process of coalescing group decisions that carry maximum group support. © 2009 Springer Science+Business Media B.V.
Inference of gene expression networks using memetic gene expression programming
- Authors: Zarnegar, Armita , Vamplew, Peter , Stranieri, Andrew
- Date: 2009
- Type: Text , Conference paper
- Relation: Paper presented at Thirty-Second Australasian Computer Science Conference (ACSC 2009), Wellington, New Zealand : Vol. 91, p. 17-23
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- Description: In this paper we aim to infer a model of genetic networks from time series data of gene expression profiles by using a new gene expression programming algorithm. Gene expression networks are modelled by differential equations which represent temporal gene expression relations. Gene Expression Programming is a new extension of genetic programming. Here we combine a local search method with gene expression programming to form a memetic algorithm in order to find not only the system of differential equations but also fine tune its constant parameters. The effectiveness of the proposed method is justified by comparing its performance with that of conventional genetic programming applied to this problem in previous studies.
Online group deliberation for the elicitation of shared values to underpin decision making
- Authors: Feldman, Yishai , Kraft, Donald , Kuflik, Tsvi , Afshar, Faezeh , Stranieri, Andrew , Yearwood, John
- Date: 2009
- Type: Text , Conference paper
- Relation: Paper presented at 7th International Conference, NGITS 2009, Next generation information technologies and systems, Haifa, Israel : 16th-18th June 2009 Vol. 5831, p. 158-168
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- Description: Values have been shown to underpin our attitudes, behaviour and motivate our decisions. Values do not exist in isolation but have meaning in relation to other values. However, values are not solely the purview of individuals as communities and organisations have core values implicit in their culture, policies and practices. Values for a group can be determined by a minority in power, derived by algorithmically merging values each group member holds, or set by deliberative consensus. The elicitation of values for the group by deliberation is likely to lead to widespread acceptance of values arrived at, however enticing individuals to engage in face to face discussion about values has been found to be very difficult. We present an online deliberative communication approach for the anonymous deliberation of values and claim that the framework has the elements required for the elicitation of shared values.
- Description: 2003007509
A study of the use of structured reasoning frameworks for improving students' reasoning quality
- Authors: Yearwood, John , Stranieri, Andrew
- Date: 2008
- Type: Text , Journal article
- Relation: Learning and Teaching: an international journal in classroom pedagogy Vol. 1, no. 1 (2008), p. 71-90
- Full Text: false
- Reviewed:
- Description: C1
- Description: 2003006498
A web-based Narrative construction environment
- Authors: Yearwood, John , Stranieri, Andrew , Osman, Deanna
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at NILE 2008: 5th International Conference on Narrative and Interactive Learning Environments, Edinburgh, Scotland : 6th-8th August 2008 p. 78-81
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- Description: This paper describes a web-based environment for constructing narrative from story snippets contributed by a community of interest. The underlying model uses an argument based structure to infer the next event in the narrative sequence. The approach makes use of both events and higher level story elements derived from Polti’s dramatic situations. Dramatic situations used are consistent with a theme, and events are generally constrained by the dramatic situation. The narrative generated is a function of the event history, the dramatic situations chosen and the plausible inferences about next events that are contributed by a community of interest in the theme. At this stage, a player’s actions are simulated using a random selection from a set and the implementation of a nonsense filter. Example outputs from the system are provided and discussed.
- Description: 2003006499
An argument structure abstraction for Bayesian belief networks: Just outcomes in on-line dispute resolution
- Authors: Muecke, Nial , Stranieri, Andrew
- Date: 2008
- Type: Text , Conference proceedings
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- Description: There are many different approaches for settling disputes on-line, such as simple email systems, fixed bid systems and intelligent systems. However, to date there have been no attempts to integrate decision support methods into the dispute resolution process for the purpose of supporting outcomes that are consistent with judicial reasoning. This paper describes how a model of judicial reasoning can be used to assist divorcees with the resolution of property issues online, in a manner that is consistent with decisions a judge would make if the matter was heard in Court. The approach uses an argument based model of the discretionary nature of decisions made by judges in Australian Family Law. This is integrated with a protocol for online dispute dialogue. Predictions of the likelihood of alternates outcomes is achieved with a series of Bayesian Belief Networks
An intelligent learning environment for traditional Chinese medicine practitioners and students
- Authors: Jia, Long , Stranieri, Andrew , Shen, J
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at HIC 2008 Australia's Health Informatics Conference; The Person in the Centre, Brunswick East, Victoria : 31st August - 2nd September 2008
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- Description: Objectives: This study aims to support the training of Traditional Chinese Medicine practitioners by embedding an expert diagnostic model for arthritis into an Intelligent Interactive Learning Environment (IILE). Background: The increasing prevalence of Traditional Chinese Medicine (TCM) outside China is characterised by the emergence of university level practitioner training and stringent regulatory requirements. TCM differential diagnosis is a difficult task that was traditionally taught by exposure to large numbers of patients in a master-apprentice context. In university degree programs, students and novice diagnosticians cannot have the exposure to cases possible in the traditional context. An online system that engages students in the interactive construction of a virtual case and provides immediate feedback on the appropriateness of student actions and the accuracy of diagnostic conclusions can enhance student learning. The system, an Intelligent Interactive Learning Environment (IILE) is based on an approach that has been shown to improve learning outcomes in intensive care nurse training. Methods: An expert model of diagnostic reasoning elicited from TCM expert practitioners lies at the core of the IILE. The knowledge acquisition is performed using an argumentation tree representation that has been shown to be effective in structuring complex knowledge and facilitating engineer - expert interactions. Problems associated with keeping knowledge bases up to date are mitigated with the use of a knowledge model known as ripple down rules permits dynamic updating of knowledge so that knowledge bases evolve over time. A simple narrative model builds up the virtual case study as user interaction proceeds. Results and discussion: This article reports preliminary results in the study that includes an overview of TCM differential diagnosis, the argument tree, the ripple down rule representation and the narrative based IILE. Segments of the knowledge model based solely on TCM literature are illustrated.
- Description: 2003006755
AWSum - applying data mining in a health care scenario
- Authors: Quinn, Anthony , Jelinek, Herbert , Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at International Conference on Intelligent Sensors, Sensor Networks and Information Processing, ISSNIP 2008, Sydney, New South Wales : 15th-18th December 2008 p. 291-296
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- Description: This paper investigates the application of a new data mining algorithm called Automated Weighted Sum, (AWSum), to diabetes screening data to explore its use in providing researchers with new insight into the disease and secondarily to explore the potential the algorithm has for the generation of prognostic models for clinical use. There are many data mining classifiers that produce high levels of predictive accuracy but their application to health research and clinical applications is limited because they are complex, produce results that are difficult to interpret and are difficult to integrate with current knowledge and practises. This is because most focus on accuracy at the expense of informing the user as to the influences that lead to their classification results. By providing this information on influences a researcher can be pointed to new potentially interesting avenues for investigation. AWSum measures influence by calculating a weight for each feature value that represents its influence on a class value relative to other class values. The results produced, although on limited data, indicated the approach has potential uses for research and has some characteristics that may be useful in the future development of prognostic models.
- Description: 2003006660
AWSum - Data mining for insight
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John , Hafen, Gaudenz
- Date: 2008
- Type: Text , Journal article
- Relation: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 5139 LNAI, no. (8 October 2008 through 10 October 2008 2008), p. 524-531
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- Description: Many classifiers achieve high levels of accuracy but have limited use in real world problems because they provide little insight into data sets, are difficult to interpret and require expertise to use. In areas such as health informatics not only do analysts require accurate classifications but they also want some insight into the influences on the classification. This can then be used to direct research and formulate interventions. This research investigates the practical applications of Automated Weighted Sum, (AWSum), a classifier that gives accuracy comparable to other techniques whist providing insight into the data. AWSum achieves this by calculating a weight for each feature value that represents its influence on the class value. The merits of AWSum in classification and insight are tested on a Cystic Fibrosis dataset with positive results. © 2008 Springer-Verlag Berlin Heidelberg.
- Description: 2003006692
AWSum -Combining classification with knowledge acquisition
- Authors: Quinn, Anthony , Stranieri, Andrew , Yearwood, John , Hafen, Gaudenz , Jelinek, Herbert
- Date: 2008
- Type: Text , Journal article
- Relation: International Journal of Software and Informatics Vol. 2, no. 2 (2008), p. 199-214
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- Description: Many classifiers achieve high levels of accuracy but have limited applicability in real world situations because they do not lead to a greater understanding or insight into the way features influence the classification. In areas such as health informatics a classifier that clearly identifies the influences on classification can be used to direct research and formulate interventions. This research investigates the practical aplications of Automated Weighted Sum, (AWSum), a classifier that provides accuracy comparable to other techniques whist providing insight into the data. This is achieved by calculating a weight for each feature value that represents its influence on the class value. The merits of this approach in classification and insight are evaluated on a Cystic Fibrosis and diabetes datasets with positive results.
Dramatic level analysis for interactive narrative
- Authors: Macfadyen, Alyx , Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Conference paper
- Relation: Paper presented at NILE 2008: 5th International Conference on Narrative and Interactive Learning Environments, Edinburgh, Scotland : 6th-8th August 2008 p. 17-22
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- Description: In interactive 3D narratives, a user’s narrative emerges through interactions with the system and embodied agencies (characters) mediated through the 3D environment. We present a methodology that identifies and measures four factors in interactive narrative where agency is present. We describe a technique for measuring drama, agency and engagement and compare the centrality of a designed interactive narrative with the emergent participatory narrative. This methodology has application as an analytic device for any interactive narrative where agency is fundamental. The adoption of the FrameNet semantic resource and the interpretation of interaction in narrative, situate this work in the domain of 3D interactive narratives, mixed and augmented realities and polymorphic narratives that cross forms of media.
- Description: 2003006540
Enhancing learning outcomes with an interactive knowledge-based learning environment providing narrative feedback
- Authors: Stranieri, Andrew , Yearwood, John
- Date: 2008
- Type: Text , Journal article
- Relation: Interactive Learning Environments Vol. 16, no. 3 (2008), p. 265-281
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- Description: This paper describes a narrative-based interactive learning environment which aims to elucidate reasoning using interactive scenarios that may be used in training novices in decision-making. Its design is based on an approach to generating narrative from knowledge that has been modelled in specific decision/reasoning domains. The approach uses a narrative model that is guided partially by inference and contextual information contained in the particular knowledge representation used, the generic/actual argument model of structured reasoning. The approach is described with examples in the area of critical care nursing training. A study of the effectiveness of this approach on learning outcomes was conducted with final year nursing students and provides evidence of improved learning outcomes.
- Description: C1
Explicit representations of reasoning to support deliberation within groups
- Authors: Stranieri, Andrew , Yearwood, John , Mays, Heather
- Date: 2008
- Type: Text , Conference proceedings
- Full Text: false
- Description: In practice, the reasoning that underpins problem solving and decision making is rarely performed by an individual in isolation from others but involves a communicative exchanges between participants in a community that can range in size from two to many thousands. Dialogue theories describe patterns in dialogues comprising many dialectical exchanges and often advance deliberation, the kind of dialogue that ensues when participants actively seek to understand all views and collectively arrive at the rationally optimal solution. This study reports on the use of argument maps for structuring reasoning by groups of secondary students. The study aimed to discover whether different maps facilitate deliberation and enhance understanding of the issues by providing an explicit representation of reasoning. An explicit representation of reasoning is a model that encapsulates all relevant claims, evidence, statutes and principles pertinent to an issue. Schemes that have been used to provide explicit representations of reasoning include the Issue Based Information System (IBIS) map, variants of the Toulmin argument structure (TAS) and other knowledge representation schemes used for intelligent computational systems. Results indicate that an explicit representation of reasoning facilitates a depth of understanding of complex issues and there is some indication that the deliberative quality of discussions is enhanced depending on the level of abstraction of the map. Copyright © 2008 COSI.
- Description: 2003006482