Continental-scale decreases in shorebird populations in Australia
- Authors: Clemens, Robert , Rogers, Danny , Hansen, Birgita , Gosbell, Ken , Minton, Clive , Straw, Phil , Bamford, Mike , Woehler, Eric , Milton, David , Weston, Michael , Venables, Bill , Weller, Dan , Hassell, Chris , Rutherford, Bill , Onton, Kimberly , Herrod, Ashley , Studds, Colin , Choi, Chi-Yeung , Dhanjal-Adams, Kiran , Murray, Nicholas , Skilleter, Gregory , Fuller, Richard
- Date: 2016
- Type: Text , Journal article
- Relation: Emu Vol. 116, no. 2 (2016), p. 119-135
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- Description: Decreases in shorebird populations are increasingly evident worldwide, especially in the East Asian-Australasian Flyway (EAAF). To arrest these declines, it is important to understand the scale of both the problem and the solutions. We analysed an expansive Australian citizen-science dataset, spanning the period 1973 to 2014, to explore factors related to differences in trends among shorebird populations in wetlands throughout Australia. Of seven resident Australian shorebird species, the four inland species exhibited continental decreases, whereas the three coastal species did not. Decreases in inland resident shorebirds were related to changes in availability of water at non-tidal wetlands, suggesting that degradation of wetlands in Australia's interior is playing a role in these declines. For migratory shorebirds, the analyses revealed continental decreases in abundance in 12 of 19 species, and decreases in 17 of 19 in the southern half of Australia over the past 15 years. Many trends were strongly associated with continental gradients in latitude or longitude, suggesting some large-scale patterns in the decreases, with steeper declines often evident in southern Australia. After accounting for this effect, local variables did not explain variation in migratory shorebird trends between sites. Our results are consistent with other studies indicating that decreases in migratory shorebird populations in the EAAF are most likely being driven primarily by factors outside Australia. This reinforces the need for urgent overseas conservation actions. However, substantially heterogeneous trends within Australia, combined with declines of inland resident shorebirds indicate effective management of Australian shorebird habitat remains important. © BirdLife Australia 2016.
Draft genome sequences of four citrobacter isolates recovered from wild australian shorebirds
- Authors: Smith, Hannah , Bean, David , Pitchers, William , Valcanis, Mary , Clarke, Rohan , Loyn, Richard , Hassell, Chris , Greenhill, Andrew
- Date: 2021
- Type: Text , Journal article
- Relation: Microbiology Resource Announcements Vol. 10, no. 1 (2021), p.
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- Description: Citrobacter is a ubiquitous bacterial genus whose members inhabit a variety of niches. Some species are clinically important for both antimicrobial resistance (AMR) carriage and as the cause of nosocomial infections. Surveillance of Citrobacter species in the environment can provide indicators of the spread of AMR genes outside clinical spaces. In this study, we present draft genome sequences of four Citrobacter isolates obtained from three species of wild Australian shorebirds. Copyright © 2021 Smith et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Presence and antimicrobial resistance profiles of Escherichia coli, Enterococcusspp. and Salmonellasp. in 12 species of Australian shorebirds and terns
- Authors: Smith, Hannah , Bean, David , Clarke, Rohan , Loyn, Richard , Larkins, Jo-Ann , Hassell, Chris , Greenhill, Andrew
- Date: 2022
- Type: Text , Journal article
- Relation: Zoonoses and Public Health Vol. 69, no. 6 (2022), p. 615-624
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- Description: Antibiotic resistance is an ongoing threat to both human and animal health. Migratory birds are a potential vector for the spread of novel pathogens and antibiotic resistance genes. To date, there has been no comprehensive study investigating the presence of antibiotic resistance (AMR) in the bacteria of Australian shorebirds or terns. In the current study, 1022 individual birds representing 12 species were sampled across three states of Australia (Victoria, South Australia, and Western Australia) and tested for the presence of phenotypically resistant strains of three bacteria with potential to be zoonotic pathogens; Escherichia coli, Enterococcusspp., and Salmonellasp. In total, 206 E. coli, 266 Enterococcusspp., and 20 Salmonellasp. isolates were recovered, with AMR detected in 42% of E. coli, 85% of Enterococcusspp., and 10% of Salmonellasp. Phenotypic resistance was commonly detected to erythromycin (79% of Enterococcusspp.), ciprofloxacin (31% of Enterococcusspp.) and streptomycin (21% of E. coli). Resident birds were more likely to carry AMR bacteria than migratory birds (p ≤.001). Bacteria isolated from shorebirds and terns are commonly resistant to at least one antibiotic, suggesting that wild bird populations serve as a potential reservoir and vector for AMR bacteria. However, globally emerging phenotypes of multidrug-resistant bacteria were not detected in Australian shorebirds. This study provides baseline data of the carriage of AMR bacteria in Australian shorebirds and terns. © 2022 The Authors. Zoonoses and Public Health published by Wiley-VCH GmbH.